Detailed information NTG1055842

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ACFDHP_RS07715
• Genome accession: NZ_CP170243
• Coordinates: 1535408..1537780 (+)
• Length: 790 a.a.
• NCBI ID: WP_107633038.1
• Uniprot ID: -
• Organism: Staphylococcus hyicus strain SC307
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1530408..1542780

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFDHP_RS07685 (ACFDHP_07685)	-	1530739..1530924 (+)	186	WP_039645424.1	CsbD family protein	-
ACFDHP_RS07690 (ACFDHP_07690)	-	1531008..1531172 (+)	165	WP_167694402.1	hypothetical protein	-
ACFDHP_RS07695 (ACFDHP_07695)	-	1531206..1532213 (-)	1008	WP_119635287.1	LLM class flavin-dependent oxidoreductase	-
ACFDHP_RS07700 (ACFDHP_07700)	-	1532435..1533580 (+)	1146	WP_107633040.1	cysteine desulfurase family protein	-
ACFDHP_RS07705 (ACFDHP_07705)	mnmA	1533577..1534689 (+)	1113	WP_305849961.1	tRNA 2-thiouridine(34) synthase MnmA	-
ACFDHP_RS07710 (ACFDHP_07710)	-	1534730..1535404 (+)	675	WP_107633039.1	tetratricopeptide repeat protein	-
ACFDHP_RS07715 (ACFDHP_07715)	recD2	1535408..1537780 (+)	2373	WP_107633038.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ACFDHP_RS07720 (ACFDHP_07720)	alaS	1538012..1540642 (+)	2631	WP_305850047.1	alanine--tRNA ligase	-
ACFDHP_RS07725 (ACFDHP_07725)	-	1540706..1540978 (+)	273	WP_039645438.1	IreB family regulatory phosphoprotein	-
ACFDHP_RS07730 (ACFDHP_07730)	ruvX	1540971..1541399 (+)	429	WP_039645440.1	Holliday junction resolvase RuvX	-
ACFDHP_RS07735 (ACFDHP_07735)	-	1541414..1541734 (+)	321	WP_039645442.1	DUF1292 domain-containing protein	-
ACFDHP_RS07740 (ACFDHP_07740)	-	1541999..1542643 (+)	645	WP_039645444.1	O-methyltransferase	-

Sequence

Protein

• Length: 790 a.a.
• Molecular weight: 89572.18 Da
• Isoelectric Point: 4.7819

>NTDB_id=1055842 ACFDHP_RS07715 WP_107633038.1 1535408..1537780(+) (recD2) [Staphylococcus hyicus strain SC307]
MENPTLFEQSYIKGNIDVILFQNSDNYYTVLKVDVEDSNEDFDNMATVVGYFPNIVEGETYTFKGQVAEHPRYGKQLKAE
TFQKEIPQTREAIIQYLSSDLFKGVGKKTAESIVDTLGDHTIQSILKDATVLEQVPKLSKAKQQQIADQVYQNQESEQIM
IRLNELGFGAKLAMDIYKFYKVDTLKIIDENPYQLVYDIRGVGFQKADQLARLIGISYTHPNRLKAGIQYIIEEICIKQG
HTYLPKDTLMKESSVLLTKQNETTIDSAMLEDVFMQLIEEKRLVDDDGHIAIPSLFYSELKSSQNVYKLMSNNVRIDTFD
QSDIQMHIGEIEETHGVSYAEAQKEALEAAMKNKLMILTGGPGTGKTTVIKGIVHLYATLHGISLNYDDYGDEDYPVVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQDTKPEDILDHAIHAKLIIIDEMSMVDTWLFHQFMAAVPEDAQVVLVGDEDQ
LPSVGPGQVFRDLITSKALPRINLIEVYRQQDGSSIIELAHKMKAGLNVDITERFHDRSFIPCHIDQIPEVVRKVVTNAV
KKGYDMSDIQVLAPMYRGNAGIHKLNKVLQDILNPIEDDDTREIQFGDVVYRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVVIVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLVF
LGDADAFNIGIKTEGQVRLTRQQMFLEQYFNTDSETNQPVQLSEETMFKIDPMINMKNVTPYDFMEIDNV

Nucleotide

• Length: 2373 bp

>NTDB_id=1055842 ACFDHP_RS07715 WP_107633038.1 1535408..1537780(+) (recD2) [Staphylococcus hyicus strain SC307]
GTGGAAAACCCAACACTATTTGAACAGTCATATATTAAAGGCAACATCGATGTCATTCTCTTTCAAAATAGTGATAATTA
TTACACTGTCCTGAAAGTAGACGTTGAAGATTCTAATGAAGACTTCGACAATATGGCTACAGTTGTTGGGTATTTTCCAA
ATATCGTTGAAGGTGAGACGTATACGTTTAAGGGACAAGTCGCAGAACATCCCCGTTATGGCAAGCAATTAAAGGCTGAA
ACGTTTCAAAAAGAAATACCTCAAACAAGAGAGGCTATCATACAATACTTATCAAGTGATTTATTTAAGGGTGTTGGAAA
AAAAACTGCTGAATCTATCGTAGATACATTAGGTGATCATACCATTCAATCTATTTTAAAAGATGCTACAGTTCTTGAAC
AAGTTCCTAAATTATCCAAAGCCAAACAACAGCAAATCGCTGATCAAGTGTATCAAAATCAAGAAAGCGAACAGATTATG
ATTCGTTTAAATGAACTTGGTTTCGGTGCAAAACTCGCCATGGATATTTATAAATTTTATAAAGTTGACACATTAAAAAT
TATTGACGAAAACCCTTACCAACTGGTATATGATATCCGCGGTGTTGGATTTCAAAAAGCGGATCAACTCGCACGTTTAA
TTGGCATTTCATATACGCATCCCAACCGATTAAAAGCTGGGATACAATACATAATTGAAGAAATATGTATTAAACAAGGG
CATACTTATTTGCCTAAAGACACACTAATGAAAGAGTCATCCGTACTTTTAACAAAGCAAAATGAAACAACAATTGATTC
GGCAATGCTAGAAGATGTATTTATGCAACTTATAGAAGAAAAACGATTAGTAGATGATGACGGACATATCGCAATTCCGA
GCTTATTTTATTCTGAATTAAAAAGTAGTCAAAATGTGTATAAACTCATGAGCAATAATGTACGCATTGATACTTTTGAT
CAATCAGATATACAGATGCATATTGGTGAAATTGAAGAGACGCATGGTGTTTCTTATGCTGAGGCCCAAAAAGAAGCGCT
GGAAGCTGCCATGAAAAATAAATTGATGATATTAACTGGTGGTCCAGGAACAGGTAAAACTACAGTTATAAAAGGGATTG
TACATCTTTATGCAACATTACATGGCATTTCTCTAAACTATGATGACTATGGTGATGAGGATTATCCTGTTGTACTTGCA
GCTCCAACTGGGCGAGCTTCTAAACGACTTCATGATGCGACGGGATTAGAAGCTATGACGATACATCGTTTAATAGGTTG
GAATCAAGACACAAAGCCTGAAGATATACTCGATCATGCCATTCATGCCAAATTGATTATCATTGATGAAATGTCAATGG
TCGATACTTGGCTGTTCCATCAATTTATGGCGGCTGTTCCAGAAGATGCGCAAGTCGTATTGGTTGGCGATGAAGACCAG
TTACCATCTGTAGGCCCAGGTCAAGTATTTAGGGATTTAATTACCTCTAAAGCGTTGCCACGAATTAATTTAATAGAGGT
TTACCGTCAACAAGATGGGTCCAGTATCATTGAATTGGCACACAAAATGAAAGCGGGGTTAAACGTAGATATTACAGAAC
GTTTCCATGATCGCTCTTTCATTCCATGTCATATTGATCAAATTCCTGAAGTCGTACGTAAAGTGGTAACGAATGCCGTT
AAAAAAGGATATGACATGTCTGATATACAAGTACTTGCGCCCATGTATCGTGGCAATGCGGGCATTCATAAACTAAATAA
AGTGCTTCAAGATATTCTTAATCCTATTGAAGATGACGATACACGTGAAATTCAATTTGGAGATGTCGTATATCGGAAAG
GGGATAAAGTACTTCAACTCGTTAATCGACCGAATGATAATATTTTTAATGGTGATATCGGCGTTATCGTTGGCATTTTT
TGGGCTAAAGAGAATGCCCTTAATAAAGACGTTGTAATTGTGGATTATGAAGGCAATGAGATCACATATTTAAAATCAGA
TTTAACGGAATTGACACATGCATATTGTACCTCTATCCATAAAGCGCAAGGATCTGAGTTCCCAATTGTTATTATGCCAA
TCGTTAAACAATATTTTAGAATGCTCCAAAAACCAATCCTTTATACAGGACTAACACGAGCAAAACAATCACTTGTGTTT
TTAGGTGACGCAGATGCATTTAATATAGGAATAAAAACGGAAGGGCAAGTAAGATTAACACGTCAACAAATGTTTCTCGA
GCAATACTTCAACACGGATTCAGAAACAAATCAACCTGTGCAACTTAGTGAAGAGACGATGTTTAAAATAGATCCAATGA
TTAATATGAAAAATGTAACCCCCTATGATTTTATGGAAATTGACAATGTTTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• AAA domain (AAA_30) (339-544)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-720)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	50.631	100	0.508