Detailed information NTG1055679

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ACFDHU_RS05280
• Genome accession: NZ_CP170225
• Coordinates: 1058409..1060781 (-)
• Length: 790 a.a.
• NCBI ID: WP_107633038.1
• Uniprot ID: -
• Organism: Staphylococcus hyicus strain SC373
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1053409..1065781

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFDHU_RS05255 (ACFDHU_05255)	-	1053546..1054190 (-)	645	WP_039645444.1	O-methyltransferase	-
ACFDHU_RS05260 (ACFDHU_05260)	-	1054455..1054775 (-)	321	WP_039645442.1	DUF1292 domain-containing protein	-
ACFDHU_RS05265 (ACFDHU_05265)	ruvX	1054790..1055218 (-)	429	WP_039645440.1	Holliday junction resolvase RuvX	-
ACFDHU_RS05270 (ACFDHU_05270)	-	1055211..1055483 (-)	273	WP_039645438.1	IreB family regulatory phosphoprotein	-
ACFDHU_RS05275 (ACFDHU_05275)	alaS	1055547..1058177 (-)	2631	WP_305850047.1	alanine--tRNA ligase	-
ACFDHU_RS05280 (ACFDHU_05280)	recD2	1058409..1060781 (-)	2373	WP_107633038.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ACFDHU_RS05285 (ACFDHU_05285)	-	1060785..1061459 (-)	675	WP_107633039.1	tetratricopeptide repeat protein	-
ACFDHU_RS05290 (ACFDHU_05290)	mnmA	1061500..1062612 (-)	1113	WP_305849961.1	tRNA 2-thiouridine(34) synthase MnmA	-
ACFDHU_RS05295 (ACFDHU_05295)	-	1062609..1063754 (-)	1146	WP_107633040.1	cysteine desulfurase family protein	-
ACFDHU_RS05300 (ACFDHU_05300)	-	1063976..1064983 (+)	1008	WP_119635287.1	LLM class flavin-dependent oxidoreductase	-
ACFDHU_RS05305 (ACFDHU_05305)	-	1065017..1065181 (-)	165	WP_167694402.1	hypothetical protein	-
ACFDHU_RS05310 (ACFDHU_05310)	-	1065265..1065450 (-)	186	WP_039645424.1	CsbD family protein	-

Sequence

Protein

• Length: 790 a.a.
• Molecular weight: 89572.18 Da
• Isoelectric Point: 4.7819

>NTDB_id=1055679 ACFDHU_RS05280 WP_107633038.1 1058409..1060781(-) (recD2) [Staphylococcus hyicus strain SC373]
MENPTLFEQSYIKGNIDVILFQNSDNYYTVLKVDVEDSNEDFDNMATVVGYFPNIVEGETYTFKGQVAEHPRYGKQLKAE
TFQKEIPQTREAIIQYLSSDLFKGVGKKTAESIVDTLGDHTIQSILKDATVLEQVPKLSKAKQQQIADQVYQNQESEQIM
IRLNELGFGAKLAMDIYKFYKVDTLKIIDENPYQLVYDIRGVGFQKADQLARLIGISYTHPNRLKAGIQYIIEEICIKQG
HTYLPKDTLMKESSVLLTKQNETTIDSAMLEDVFMQLIEEKRLVDDDGHIAIPSLFYSELKSSQNVYKLMSNNVRIDTFD
QSDIQMHIGEIEETHGVSYAEAQKEALEAAMKNKLMILTGGPGTGKTTVIKGIVHLYATLHGISLNYDDYGDEDYPVVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQDTKPEDILDHAIHAKLIIIDEMSMVDTWLFHQFMAAVPEDAQVVLVGDEDQ
LPSVGPGQVFRDLITSKALPRINLIEVYRQQDGSSIIELAHKMKAGLNVDITERFHDRSFIPCHIDQIPEVVRKVVTNAV
KKGYDMSDIQVLAPMYRGNAGIHKLNKVLQDILNPIEDDDTREIQFGDVVYRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVVIVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLVF
LGDADAFNIGIKTEGQVRLTRQQMFLEQYFNTDSETNQPVQLSEETMFKIDPMINMKNVTPYDFMEIDNV

Nucleotide

• Length: 2373 bp

>NTDB_id=1055679 ACFDHU_RS05280 WP_107633038.1 1058409..1060781(-) (recD2) [Staphylococcus hyicus strain SC373]
GTGGAAAACCCAACACTATTTGAACAGTCATATATTAAAGGCAACATCGATGTCATTCTCTTTCAAAATAGTGATAATTA
TTACACTGTCCTGAAAGTAGACGTTGAAGATTCTAATGAAGACTTCGACAATATGGCTACAGTTGTTGGGTATTTTCCAA
ATATCGTTGAAGGTGAGACGTATACGTTTAAGGGACAAGTCGCAGAACATCCCCGTTATGGCAAGCAATTAAAGGCTGAA
ACGTTTCAAAAAGAAATACCTCAAACAAGAGAGGCTATCATACAATACTTATCAAGTGATTTATTTAAGGGTGTTGGAAA
AAAAACTGCTGAATCTATCGTAGATACATTAGGTGATCATACCATTCAATCTATTTTAAAAGATGCTACAGTTCTTGAAC
AAGTTCCTAAATTATCCAAAGCCAAACAACAGCAAATCGCTGATCAAGTGTATCAAAATCAAGAAAGCGAACAGATTATG
ATTCGTTTAAATGAACTTGGTTTCGGTGCAAAACTCGCCATGGATATTTATAAATTTTATAAAGTTGACACATTAAAAAT
TATTGACGAAAACCCTTACCAACTGGTATATGATATCCGCGGTGTTGGATTTCAAAAAGCGGATCAACTCGCACGTTTAA
TTGGCATTTCATATACGCATCCCAACCGATTAAAAGCTGGGATACAATACATAATTGAAGAAATATGTATTAAACAAGGG
CATACTTATTTGCCTAAAGACACACTAATGAAAGAGTCATCCGTACTTTTAACAAAGCAAAATGAAACAACAATTGATTC
GGCAATGCTAGAAGATGTATTTATGCAACTTATAGAAGAAAAACGATTAGTAGATGATGACGGACATATCGCAATTCCGA
GCTTATTTTATTCTGAATTAAAAAGTAGTCAAAATGTGTATAAACTCATGAGCAATAATGTACGCATTGATACTTTTGAT
CAATCAGATATACAGATGCATATTGGTGAAATTGAAGAGACGCATGGTGTTTCTTATGCTGAGGCCCAAAAAGAAGCGCT
GGAAGCTGCCATGAAAAATAAATTGATGATATTAACTGGTGGTCCAGGAACAGGTAAAACTACAGTTATAAAAGGGATTG
TACATCTTTATGCAACATTACATGGCATTTCTCTAAACTATGATGACTATGGTGATGAGGATTATCCTGTTGTACTTGCA
GCTCCAACTGGGCGAGCTTCTAAACGACTTCATGATGCGACGGGATTAGAAGCTATGACGATACATCGTTTAATAGGTTG
GAATCAAGACACAAAGCCTGAAGATATACTCGATCATGCCATTCATGCCAAATTGATTATCATTGATGAAATGTCAATGG
TCGATACTTGGCTGTTCCATCAATTTATGGCGGCTGTTCCAGAAGATGCGCAAGTCGTATTGGTTGGCGATGAAGACCAG
TTACCATCTGTAGGCCCAGGTCAAGTATTTAGGGATTTAATTACCTCTAAAGCGTTGCCACGAATTAATTTAATAGAGGT
TTACCGTCAACAAGATGGGTCCAGTATCATTGAATTGGCACACAAAATGAAAGCGGGGTTAAACGTAGATATTACAGAAC
GTTTCCATGATCGCTCTTTCATTCCATGTCATATTGATCAAATTCCTGAAGTCGTACGTAAAGTGGTAACGAATGCCGTT
AAAAAAGGATATGACATGTCTGATATACAAGTACTTGCGCCCATGTATCGTGGCAATGCGGGCATTCATAAACTAAATAA
AGTGCTTCAAGATATTCTTAATCCTATTGAAGATGACGATACACGTGAAATTCAATTTGGAGATGTCGTATATCGGAAAG
GGGATAAAGTACTTCAACTCGTTAATCGACCGAATGATAATATTTTTAATGGTGATATCGGCGTTATCGTTGGCATTTTT
TGGGCTAAAGAGAATGCCCTTAATAAAGACGTTGTAATTGTGGATTATGAAGGCAATGAGATCACATATTTAAAATCAGA
TTTAACGGAATTGACACATGCATATTGTACCTCTATCCATAAAGCGCAAGGATCTGAGTTCCCAATTGTTATTATGCCAA
TCGTTAAACAATATTTTAGAATGCTCCAAAAACCAATCCTTTATACAGGACTAACACGAGCAAAACAATCACTTGTGTTT
TTAGGTGACGCAGATGCATTTAATATAGGAATAAAAACGGAAGGGCAAGTAAGATTAACACGTCAACAAATGTTTCTCGA
GCAATACTTCAACACGGATTCAGAAACAAATCAACCTGTGCAACTTAGTGAAGAGACGATGTTTAAAATAGATCCAATGA
TTAATATGAAAAATGTAACCCCCTATGATTTTATGGAAATTGACAATGTTTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• AAA domain (AAA_30) (339-544)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-720)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	50.631	100	0.508