Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACLV7H_RS07325 Genome accession   NZ_OZ217340
Coordinates   1402318..1403106 (-) Length   262 a.a.
NCBI ID   WP_000940724.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1397318..1408106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS07300 (SORA22_14690) vex3 1397595..1398974 (-) 1380 WP_045590701.1 ABC transporter permease subunit Vex3 -
  ACLV7H_RS07305 (SORA22_14700) vex2 1399260..1399892 (-) 633 WP_045590698.1 ABC transporter ATP-binding subunit Vex2 -
  ACLV7H_RS07310 (SORA22_14710) - 1399905..1401182 (-) 1278 WP_045590696.1 ABC transporter permease -
  ACLV7H_RS07320 (SORA22_14730) - 1401743..1402318 (-) 576 WP_411866773.1 cysteine hydrolase family protein -
  ACLV7H_RS07325 (SORA22_14740) codY 1402318..1403106 (-) 789 WP_000940724.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACLV7H_RS07330 (SORA22_14750) - 1403388..1404965 (-) 1578 WP_411866774.1 DEAD/DEAH box helicase -
  ACLV7H_RS07335 (SORA22_14760) - 1405281..1406597 (+) 1317 WP_411866775.1 FAD-containing oxidoreductase -
  ACLV7H_RS07340 (SORA22_14770) - 1406762..1407967 (+) 1206 WP_411866776.1 hypothetical protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29669.01 Da        Isoelectric Point: 5.2441

>NTDB_id=1055644 ACLV7H_RS07325 WP_000940724.1 1402318..1403106(-) (codY) [Streptococcus oralis isolate S. oralis A22]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIDCNACIVNNKGRLLGYFMRYKTNNDRVEQFFQTKTFPDVYV
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILAELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIGDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1055644 ACLV7H_RS07325 WP_000940724.1 1402318..1403106(-) (codY) [Streptococcus oralis isolate S. oralis A22]
ATGGCACATTTATTAGAAAAAACAAGAAAAATCACGTCTATTCTAAAGCGCTCTGAGGAGCAACTCCAAGATGAACTTCC
TTACAATGCGATCACACGCCAGTTAGCTGATATTATTGACTGTAACGCTTGTATTGTGAATAACAAGGGACGTCTCTTGG
GTTACTTTATGCGTTATAAGACCAATAATGACCGTGTAGAACAGTTCTTCCAAACCAAAACCTTCCCTGACGTCTATGTA
CAAGGGGCAAACATGATCTATGATACGGAAGCCAATCTTCCTGTTGAACATGATTTGACCATTTTCCCTGTAGAGAGTCG
TGCGGACTTTCCAGATGGTTTGACGACCATCGCTCCGATTCATGTATCAGGGATTCGTTTGGGTTCCTTGATTATTTGGC
GCAATGATAAGAAGTTTGAAGATGAAGATTTGATTCTTGTCGAGATTGCGAGCACGGTAGTAGGGATTCAACTGTTGAAC
TTCCAACGTGAAGAAGATGAGAAAAATATTCGCCGTCGTACGGCTGTTACCATGGCGGTTAATACCCTCTCCTATTCAGA
ACTTCGTGCCGTATCAGCTATTTTAGCTGAATTGGATGGAAATGAAGGGCAGCTGACTGCATCAGTTATTGCAGATCGTA
TTGGCATCACGCGCTCAGTGATTGTCAATGCGCTTCGGAAATTGGAGTCTGCGGGAATTATTGAGAGTCGTTCATTAGGA
ATGAAGGGGACTTATCTCAAAGTTCTAATTGGTGATATTTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

63.74

100

0.637
  codY Bacillus subtilis subsp. subtilis str. 168

50

93.893

0.469