Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACLV7H_RS02670 Genome accession   NZ_OZ217340
Coordinates   476201..477472 (-) Length   423 a.a.
NCBI ID   WP_411866277.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 471201..482472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS02645 (SORA22_05230) - 471301..472446 (-) 1146 WP_411866275.1 low temperature requirement protein A -
  ACLV7H_RS02650 (SORA22_05240) - 472661..473113 (-) 453 WP_411867066.1 XRE family transcriptional regulator -
  ACLV7H_RS02655 (SORA22_05250) - 473634..474239 (-) 606 WP_061597013.1 DUF1269 domain-containing protein -
  ACLV7H_RS02660 (SORA22_05260) - 475010..475525 (-) 516 WP_411866276.1 DUF308 domain-containing protein -
  ACLV7H_RS02670 (SORA22_05280) rarA 476201..477472 (-) 1272 WP_411866277.1 replication-associated recombination protein A Machinery gene
  ACLV7H_RS02675 (SORA22_05290) - 477588..478058 (+) 471 WP_411866278.1 DUF3013 family protein -
  ACLV7H_RS02680 (SORA22_05300) - 478078..479139 (+) 1062 WP_411866279.1 site-2 protease family protein -
  ACLV7H_RS02685 (SORA22_05310) - 479141..479578 (+) 438 WP_411866280.1 NUDIX hydrolase -
  ACLV7H_RS02690 (SORA22_05320) - 479566..479967 (+) 402 WP_411866281.1 hypothetical protein -
  ACLV7H_RS02695 (SORA22_05330) prmA 479946..480896 (+) 951 WP_411866282.1 50S ribosomal protein L11 methyltransferase -
  ACLV7H_RS02700 (SORA22_05340) - 480898..481641 (+) 744 WP_411866283.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46923.36 Da        Isoelectric Point: 6.1959

>NTDB_id=1055604 ACLV7H_RS02670 WP_411866277.1 476201..477472(-) (rarA) [Streptococcus oralis isolate S. oralis A22]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKGAIQ
IALTNPERGFDFPVELDDETLDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENSLQRSYITMDKDGDGHY
DALSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALSDLKTSGHLPIPRHLRDGHYSGSKELGNAQNYLYPHNYPGHWVKQEYLPEKIRDHHYFSP
EDSGKYERALAQRKETIDKLRDL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1055604 ACLV7H_RS02670 WP_411866277.1 476201..477472(-) (rarA) [Streptococcus oralis isolate S. oralis A22]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTAATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGTCGCATGGTGGAGGCCAACCGCCTATCCTCCATGATTCTCTACGGACCTCCAGGAATCGGCAAGACCA
GTATCGCCTCAGCCATCGCTGGAACGACCAAGTATGCCTTTCGGACCTTTAACGCGACAGTGGATAGTAAAAAGCGACTG
CAAGAAATCGCAGAAGAAGCTAAATTCTCTGGAGGATTAGTTCTGTTACTGGACGAGATTCATCGTCTTGATAAGACCAA
GCAAGACTTTCTTCTGCCACTTTTGGAAAGTGGTCTGGTTATCATGATTGGCGCAACGACTGAAAATCCCTTCTTTTCTG
TCACTCCTGCTATTCGCAGCCGTGTTCAGATTTTTGAATTGGAACCCTTGTCCAATCAAGATGTCAAAGGAGCGATTCAG
ATTGCTCTCACTAATCCTGAACGAGGTTTTGACTTCCCAGTGGAGTTGGATGATGAGACCCTTGATTTTATCGCAACATC
TACTAATGGTGACCTCCGTTCTGCCTTTAACTCTCTGGATCTGGCTGTTCTCTCTACCCCCGAGAATGACAAGGGCATCC
GCCATATCACTCTTGATATCATGGAAAATAGCTTACAGAGGAGTTACATTACCATGGACAAGGATGGGGACGGTCACTAT
GATGCCCTTTCTGCCCTGCAAAAATCCATCCGCGGCTCGGATGTGGATGCCAGTCTCCACTACGCAGCCCGCTTGATTGA
AGCTGGAGATCTGCCTAGCCTCGCTCGTCGTTTAACTGTGATTGCTTATGAAGATATCGGCTTGGCCAATCCTGAGGCTC
AAATCCATACCGTAACTGCTCTAGATGCTGCACAAAGGATTGGTTTCCCAGAAGCCCGCATCCTCATTGCTAATGTCGTC
ATTGATCTGGCACTTTCACCTAAGTCTAACTCAGCATATGTGGCTATGGATAAGGCCTTGTCTGACCTTAAAACATCGGG
ACATCTGCCGATTCCACGTCACTTGCGAGATGGACATTATAGCGGTAGCAAGGAACTAGGTAACGCCCAAAATTATCTCT
ATCCACATAATTATCCTGGTCACTGGGTCAAGCAAGAATACCTACCAGAAAAAATCCGTGACCATCACTACTTTTCTCCA
GAAGATAGTGGAAAATACGAACGGGCCCTGGCTCAACGCAAGGAAACCATTGATAAATTACGGGATTTGTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.314

98.582

0.565