Detailed information NTG1055555

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ACFDHY_RS05495
• Genome accession: NZ_CP170216
• Coordinates: 1069187..1071559 (-)
• Length: 790 a.a.
• NCBI ID: WP_381420322.1
• Uniprot ID: -
• Organism: Staphylococcus hyicus strain SC393
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1064187..1076559

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFDHY_RS05470 (ACFDHY_05470)	-	1064324..1064968 (-)	645	WP_039645444.1	O-methyltransferase	-
ACFDHY_RS05475 (ACFDHY_05475)	-	1065233..1065553 (-)	321	WP_039645442.1	DUF1292 domain-containing protein	-
ACFDHY_RS05480 (ACFDHY_05480)	ruvX	1065568..1065996 (-)	429	WP_039645440.1	Holliday junction resolvase RuvX	-
ACFDHY_RS05485 (ACFDHY_05485)	-	1065989..1066261 (-)	273	WP_039645438.1	IreB family regulatory phosphoprotein	-
ACFDHY_RS05490 (ACFDHY_05490)	alaS	1066325..1068955 (-)	2631	WP_107633037.1	alanine--tRNA ligase	-
ACFDHY_RS05495 (ACFDHY_05495)	recD2	1069187..1071559 (-)	2373	WP_381420322.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ACFDHY_RS05500 (ACFDHY_05500)	-	1071563..1072237 (-)	675	WP_381420324.1	tetratricopeptide repeat protein	-
ACFDHY_RS05505 (ACFDHY_05505)	mnmA	1072278..1073390 (-)	1113	WP_039645430.1	tRNA 2-thiouridine(34) synthase MnmA	-
ACFDHY_RS05510 (ACFDHY_05510)	-	1073387..1074532 (-)	1146	WP_257053340.1	cysteine desulfurase	-
ACFDHY_RS05515 (ACFDHY_05515)	-	1074754..1075761 (+)	1008	WP_119635287.1	LLM class flavin-dependent oxidoreductase	-
ACFDHY_RS05520 (ACFDHY_05520)	-	1075795..1075959 (-)	165	WP_167694402.1	hypothetical protein	-
ACFDHY_RS05525 (ACFDHY_05525)	-	1076043..1076228 (-)	186	WP_039645424.1	CsbD family protein	-

Sequence

Protein

• Length: 790 a.a.
• Molecular weight: 89606.20 Da
• Isoelectric Point: 4.7819

>NTDB_id=1055555 ACFDHY_RS05495 WP_381420322.1 1069187..1071559(-) (recD2) [Staphylococcus hyicus strain SC393]
MENPTLFEQSYIKGNIDVILFQNSDNYYTVLKVDVEDSNEDFDNMATVVGYFPNIVEGETYTFKGQVAEHPRYGKQLKAE
TFQKEIPQTREAIIQYLSSDLFKGVGKKTAESIVDTLGDHTIQSILKDATVLEQVPKLSKAKQQQIADQVYQNQESEQIM
IRLNELGFGAKLAMDIYKFYKVDTFKIIDENPYQLVYDIRGVGFQKADQLARLIGISYTHPNRLKAGIQYIIEEICIKQG
HTYLPKDTLMKESSVLLTKQNETTIDSAMLEDVFMQLIEEKRLVDDDGHIAIPSLFYSELKSSQNVYKLMSNNVRIDTFD
QSDIQMHIGEIEETHGVSYAEAQKEALEAAMKNKLMILTGGPGTGKTTVIKGIVHLYATLHGISLNYDDYGDEDYPVVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQDTKPEDILDHAIHAKLIIIDEMSMVDTWLFHQFMAAVPEDAQVVLVGDEDQ
LPSVGPGQVFRDLITSKALPRINLIEVYRQQDGSSIIELAHKMKAGLNVDITERFHDRSFIPCHIDQIPEVVRKVVTNAV
KKGYDMSDIQVLAPMYRGNAGIHKLNKVLQDILNPIEDDDTREIQFGDVVYRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVVIVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLVF
LGDADAFNIGIKTEGQVRLTRQQMFLEQYFNTDSETNQPVQLSEETMFKIDPMINMKNVTPYDFMEIDNV

Nucleotide

• Length: 2373 bp

>NTDB_id=1055555 ACFDHY_RS05495 WP_381420322.1 1069187..1071559(-) (recD2) [Staphylococcus hyicus strain SC393]
GTGGAAAACCCAACACTATTTGAACAGTCATATATTAAAGGCAACATCGATGTCATTCTCTTTCAAAATAGTGATAATTA
TTACACTGTCCTGAAAGTAGACGTTGAAGATTCTAATGAAGACTTCGACAATATGGCTACAGTTGTTGGGTATTTTCCAA
ATATCGTTGAAGGTGAGACGTATACGTTTAAGGGACAAGTCGCAGAACATCCCCGTTATGGCAAGCAATTAAAGGCTGAA
ACGTTTCAAAAAGAAATACCTCAAACAAGAGAGGCTATCATACAATACTTATCAAGTGATTTATTTAAGGGTGTTGGAAA
AAAAACTGCTGAATCTATCGTAGATACATTAGGTGATCATACCATTCAATCTATTTTAAAAGATGCTACAGTTCTTGAAC
AAGTTCCTAAATTATCCAAAGCCAAACAACAGCAAATCGCTGATCAAGTGTATCAAAATCAAGAAAGCGAACAGATTATG
ATTCGTTTAAATGAACTTGGTTTCGGTGCAAAACTCGCCATGGATATTTATAAATTTTATAAAGTTGACACATTTAAAAT
TATTGACGAAAACCCTTACCAACTGGTATATGATATCCGCGGTGTTGGATTTCAAAAAGCGGATCAACTCGCACGTTTAA
TTGGCATTTCATATACGCATCCCAACCGATTAAAAGCTGGGATACAATACATAATTGAAGAAATATGTATTAAACAAGGG
CATACTTATTTGCCTAAAGACACACTAATGAAAGAGTCATCCGTACTTTTAACAAAGCAAAATGAAACAACAATTGATTC
GGCAATGCTAGAAGATGTATTTATGCAACTTATAGAAGAAAAACGATTAGTAGATGATGACGGACATATCGCAATTCCGA
GCTTATTTTATTCTGAATTAAAAAGTAGTCAAAATGTGTATAAACTCATGAGCAATAATGTACGCATTGATACTTTTGAT
CAATCAGATATACAGATGCATATTGGTGAAATTGAAGAGACGCATGGTGTTTCTTATGCTGAGGCCCAAAAAGAAGCGCT
GGAAGCTGCCATGAAAAATAAATTGATGATATTAACTGGTGGGCCAGGAACAGGTAAAACTACAGTTATAAAAGGGATTG
TACATCTTTATGCAACATTACATGGCATTTCTCTAAACTATGATGACTATGGTGATGAGGATTATCCTGTCGTACTTGCA
GCTCCAACTGGGCGAGCTTCTAAACGACTTCATGATGCGACGGGATTAGAAGCTATGACGATACATCGTTTAATAGGTTG
GAATCAAGACACAAAGCCTGAAGATATACTCGATCATGCCATTCATGCCAAATTGATTATCATTGATGAAATGTCAATGG
TCGATACTTGGCTGTTCCATCAATTTATGGCGGCTGTTCCAGAAGATGCGCAAGTCGTATTGGTTGGCGATGAAGACCAG
TTACCATCTGTAGGCCCAGGTCAAGTATTTAGGGATTTAATTACCTCTAAAGCGTTGCCACGAATTAATTTAATAGAGGT
TTACCGTCAACAAGATGGGTCCAGTATCATTGAATTGGCACACAAAATGAAAGCGGGGTTAAACGTAGATATTACAGAAC
GTTTCCATGATCGCTCTTTCATTCCATGTCATATTGATCAAATTCCTGAAGTCGTACGTAAAGTGGTAACGAATGCCGTT
AAAAAAGGATATGACATGTCTGATATACAAGTACTTGCACCCATGTATCGTGGCAATGCGGGCATTCATAAACTAAATAA
AGTGCTTCAAGATATTCTTAATCCTATTGAAGATGACGATACACGTGAAATTCAATTTGGAGATGTCGTATATCGGAAAG
GGGATAAAGTACTTCAACTCGTTAATCGACCGAATGATAATATTTTTAATGGTGATATCGGCGTTATCGTTGGCATTTTT
TGGGCTAAAGAGAATGCCCTTAATAAAGACGTTGTAATTGTGGATTATGAAGGCAATGAGATCACATATTTAAAATCAGA
TTTAACGGAATTGACACATGCATATTGTACCTCTATCCATAAAGCGCAAGGATCTGAGTTCCCAATTGTTATTATGCCAA
TCGTTAAACAATATTTTAGAATGCTCCAAAAACCAATCCTTTATACAGGACTAACACGAGCAAAACAATCACTTGTGTTT
TTAGGTGACGCAGATGCATTTAATATAGGAATAAAAACGGAAGGGCAAGTAAGATTAACACGTCAACAAATGTTTCTCGA
GCAATACTTCAACACGGATTCAGAAACAAATCAACCTGTGCAACTTAGTGAAGAGACGATGTTTAAAATAGATCCAATGA
TTAATATGAAAAATGTAACCCCCTATGATTTTATGGAAATTGACAATGTTTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (339-544)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-720)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	50.505	100	0.506