Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8567_RS02310 Genome accession   NZ_AP028407
Coordinates   454002..454517 (+) Length   171 a.a.
NCBI ID   WP_134250018.1    Uniprot ID   -
Organism   Campylobacter coli strain IDH-11847     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449002..459517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8567_RS02285 (I11847_04410) - 449462..449800 (+) 339 WP_002777761.1 hypothetical protein -
  R8567_RS02290 (I11847_04420) - 449809..450534 (+) 726 WP_002783928.1 phosphatidate cytidylyltransferase -
  R8567_RS02295 (I11847_04430) dxr 450531..451601 (+) 1071 WP_157142294.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8567_RS02300 (I11847_04440) - 451603..452997 (+) 1395 WP_063266130.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8567_RS02305 (I11847_04450) tsaD 452994..454001 (+) 1008 WP_317646530.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8567_RS02310 (I11847_04460) ctsG 454002..454517 (+) 516 WP_134250018.1 type II secretion system protein Machinery gene
  R8567_RS02315 - 454517..455765 (+) 1249 Protein_447 DUF2920 family protein -
  R8567_RS02320 (I11847_04490) - 455775..457589 (+) 1815 WP_317646532.1 motility associated factor glycosyltransferase family protein -
  R8567_RS02325 (I11847_04500) - 457686..459407 (+) 1722 WP_317646535.1 flagellin A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18694.52 Da        Isoelectric Point: 6.4683

>NTDB_id=105544 R8567_RS02310 WP_134250018.1 454002..454517(+) (ctsG) [Campylobacter coli strain IDH-11847]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105544 R8567_RS02310 WP_134250018.1 454002..454517(+) (ctsG) [Campylobacter coli strain IDH-11847]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAGGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTTATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCAAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

95.322

100

0.953

Multiple sequence alignment