Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LMH68_RS07345 Genome accession   NZ_CP170175
Coordinates   1614549..1615262 (+) Length   237 a.a.
NCBI ID   WP_170962812.1    Uniprot ID   -
Organism   Vibrio sp. F13 strain 10N.222.55.B3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1609549..1620262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH68_RS07330 (LMH68_007330) - 1610395..1612725 (+) 2331 WP_229648015.1 Tex family protein -
  LMH68_RS07335 (LMH68_007335) - 1612850..1613323 (-) 474 WP_017066129.1 hypothetical protein -
  LMH68_RS07340 (LMH68_007340) bioH 1613679..1614455 (-) 777 WP_017063077.1 pimeloyl-ACP methyl ester esterase BioH -
  LMH68_RS07345 (LMH68_007345) comF 1614549..1615262 (+) 714 WP_170962812.1 ComF family protein Machinery gene
  LMH68_RS07350 (LMH68_007350) nfuA 1615372..1615956 (+) 585 WP_004741449.1 Fe-S biogenesis protein NfuA -
  LMH68_RS07355 (LMH68_007355) nudE 1616246..1616797 (+) 552 WP_017062476.1 ADP compounds hydrolase NudE -
  LMH68_RS07360 (LMH68_007360) cysQ 1616834..1617661 (+) 828 WP_017062477.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LMH68_RS07365 (LMH68_007365) - 1617781..1618560 (-) 780 WP_229648016.1 type II secretion system protein N -
  LMH68_RS07370 (LMH68_007370) - 1618562..1619050 (-) 489 WP_017062479.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27161.51 Da        Isoelectric Point: 9.0097

>NTDB_id=1055433 LMH68_RS07345 WP_170962812.1 1614549..1615262(+) (comF) [Vibrio sp. F13 strain 10N.222.55.B3]
MLSDWLQKHTPRLVTPQCHLCKLDKLPSDTHPRWCNSCLKLFQPVPRCQRCGLKTLLTVEQCGQCLSQPPPWHRLYCVGD
YTFPTAGYIQQMKYADKFWFARDLSKLLASRIEYPAPLITSVPLHWRRYTHRGFNQSKLLADYTAQELGVESDVLFRRIR
STASQQGLTKSARLHNLKSAFALRKQDVQGTIPSHVAIIDDVVTTGSTVYQLCQLLLEVDVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1055433 LMH68_RS07345 WP_170962812.1 1614549..1615262(+) (comF) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACCTGTGCAAACTTGATAAACTGCC
CAGTGATACACATCCTCGATGGTGCAATTCTTGTCTCAAACTCTTTCAGCCAGTACCACGCTGCCAACGATGTGGTTTAA
AAACACTGCTCACAGTAGAGCAGTGCGGACAGTGCTTATCTCAACCTCCACCTTGGCATCGCCTCTACTGTGTCGGCGAT
TACACCTTCCCTACAGCAGGTTACATTCAGCAAATGAAGTACGCTGATAAGTTTTGGTTTGCACGTGATCTATCTAAGCT
ATTGGCATCACGTATCGAATATCCTGCTCCGCTGATCACCAGCGTGCCGCTGCATTGGCGTCGATATACTCATCGCGGCT
TTAATCAAAGTAAGCTGCTAGCCGACTACACGGCTCAAGAGCTTGGCGTTGAAAGTGATGTGCTCTTTCGTCGAATTCGC
TCAACGGCTTCCCAGCAGGGGCTGACTAAATCCGCACGATTACACAATCTAAAGAGCGCTTTTGCGCTGCGAAAACAAGA
CGTTCAAGGAACTATCCCCTCTCACGTCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTGGACGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.356

99.578

0.561
  comF Vibrio campbellii strain DS40M4

49.59

100

0.511

Multiple sequence alignment