Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB3Z04_RS08165 Genome accession   NZ_CP170168
Coordinates   1615022..1615801 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain BS2-7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610022..1620801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Z04_RS08145 trmFO 1610709..1612016 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB3Z04_RS08150 xerC 1612086..1613003 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  AB3Z04_RS08155 hslV 1613019..1613564 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  AB3Z04_RS08160 hslU 1613581..1614984 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  AB3Z04_RS08165 codY 1615022..1615801 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB3Z04_RS08170 flgB 1616155..1616544 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  AB3Z04_RS08175 flgC 1616544..1616996 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  AB3Z04_RS08180 fliE 1617007..1617327 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  AB3Z04_RS08185 fliF 1617370..1618980 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  AB3Z04_RS08190 fliG 1618993..1620009 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  AB3Z04_RS08195 fliH 1620002..1620757 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1055380 AB3Z04_RS08165 WP_003154263.1 1615022..1615801(+) (codY) [Bacillus velezensis strain BS2-7]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1055380 AB3Z04_RS08165 WP_003154263.1 1615022..1615801(+) (codY) [Bacillus velezensis strain BS2-7]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment