Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACNUD5_RS02905 Genome accession   NZ_OZ197101
Coordinates   530373..531146 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus isolate 23S01948-3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 525373..536146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD5_RS02885 trmFO 525717..527024 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACNUD5_RS02890 xerC 527441..528337 (+) 897 WP_001015606.1 tyrosine recombinase XerC -
  ACNUD5_RS02895 hslV 528334..528879 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACNUD5_RS02900 hslU 528945..530348 (+) 1404 WP_416743135.1 ATP-dependent protease ATPase subunit HslU -
  ACNUD5_RS02905 codY 530373..531146 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACNUD5_RS02910 - 531197..531289 (+) 93 WP_001790530.1 hypothetical protein -
  ACNUD5_RS02915 rpsB 531488..532255 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACNUD5_RS02920 - 532289..532402 (+) 114 WP_001789890.1 hypothetical protein -
  ACNUD5_RS02925 tsf 532437..533318 (+) 882 WP_000201387.1 translation elongation factor Ts -
  ACNUD5_RS02930 pyrH 533455..534177 (+) 723 WP_000057330.1 UMP kinase -
  ACNUD5_RS02935 frr 534196..534750 (+) 555 WP_001280006.1 ribosome recycling factor -
  ACNUD5_RS02940 - 535123..535893 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=1055201 ACNUD5_RS02905 WP_000055337.1 530373..531146(+) (codY) [Staphylococcus aureus isolate 23S01948-3]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1055201 ACNUD5_RS02905 WP_000055337.1 530373..531146(+) (codY) [Staphylococcus aureus isolate 23S01948-3]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment