Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8920_RS02125 Genome accession   NZ_AP028404
Coordinates   426963..427478 (+) Length   171 a.a.
NCBI ID   WP_002805379.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-11568     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421963..432478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8920_RS02100 (B11568_04070) - 422419..422757 (+) 339 WP_002777761.1 hypothetical protein -
  R8920_RS02105 (B11568_04080) - 422766..423491 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  R8920_RS02110 (B11568_04090) dxr 423488..424564 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8920_RS02115 (B11568_04100) - 424561..425955 (+) 1395 WP_002777754.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8920_RS02120 (B11568_04110) tsaD 425952..426959 (+) 1008 WP_002785735.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8920_RS02125 (B11568_04120) ctsG 426963..427478 (+) 516 WP_002805379.1 type II secretion system protein Machinery gene
  R8920_RS02130 (B11568_04130) - 427478..428728 (+) 1251 WP_002817246.1 DUF2920 family protein -
  R8920_RS02135 (B11568_04140) - 428739..430562 (+) 1824 WP_138013339.1 motility associated factor glycosyltransferase family protein -
  R8920_RS02140 (B11568_04150) - 430559..432373 (+) 1815 WP_317727035.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18968.98 Da        Isoelectric Point: 8.4832

>NTDB_id=105520 R8920_RS02125 WP_002805379.1 426963..427478(+) (ctsG) [Campylobacter coli strain BCH-11568]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLNN
FIGIKEVNFKVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105520 R8920_RS02125 WP_002805379.1 426963..427478(+) (ctsG) [Campylobacter coli strain BCH-11568]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAAGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCCAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

77.778

100

0.778

Multiple sequence alignment