Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACNUDU_RS10785 Genome accession   NZ_OZ197099
Coordinates   2141041..2141814 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus isolate 23S00079-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2136041..2146814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDU_RS10750 - 2136294..2137064 (-) 771 WP_000473705.1 isoprenyl transferase -
  ACNUDU_RS10755 frr 2137437..2137991 (-) 555 WP_001280006.1 ribosome recycling factor -
  ACNUDU_RS10760 pyrH 2138010..2138732 (-) 723 WP_000057330.1 UMP kinase -
  ACNUDU_RS10765 tsf 2138869..2139750 (-) 882 WP_000201387.1 translation elongation factor Ts -
  ACNUDU_RS10770 - 2139785..2139898 (-) 114 WP_001789890.1 hypothetical protein -
  ACNUDU_RS10775 rpsB 2139932..2140699 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACNUDU_RS10780 - 2140898..2140990 (-) 93 WP_001790530.1 hypothetical protein -
  ACNUDU_RS10785 codY 2141041..2141814 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACNUDU_RS10790 hslU 2141839..2143242 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACNUDU_RS10795 hslV 2143308..2143853 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACNUDU_RS10800 xerC 2143850..2144746 (-) 897 WP_001015606.1 tyrosine recombinase XerC -
  ACNUDU_RS10805 trmFO 2145163..2146470 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=1055072 ACNUDU_RS10785 WP_000055337.1 2141041..2141814(-) (codY) [Staphylococcus aureus isolate 23S00079-1]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1055072 ACNUDU_RS10785 WP_000055337.1 2141041..2141814(-) (codY) [Staphylococcus aureus isolate 23S00079-1]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428