Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACE6HX_RS07705 Genome accession   NZ_CP170098
Coordinates   1543711..1544490 (+) Length   259 a.a.
NCBI ID   WP_034662375.1    Uniprot ID   A0AAE3WK82
Organism   Bacillus pumilus strain X14-67     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1538711..1549490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE6HX_RS07685 (ACE6HX_07685) trmFO 1539415..1540719 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACE6HX_RS07690 (ACE6HX_07690) xerC 1540782..1541699 (+) 918 WP_060596252.1 tyrosine recombinase XerC -
  ACE6HX_RS07695 (ACE6HX_07695) hslV 1541714..1542259 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  ACE6HX_RS07700 (ACE6HX_07700) hslU 1542276..1543676 (+) 1401 WP_060596254.1 HslU--HslV peptidase ATPase subunit -
  ACE6HX_RS07705 (ACE6HX_07705) codY 1543711..1544490 (+) 780 WP_034662375.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACE6HX_RS07710 (ACE6HX_07710) flgB 1544778..1545167 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  ACE6HX_RS07715 (ACE6HX_07715) flgC 1545167..1545619 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  ACE6HX_RS07720 (ACE6HX_07720) fliE 1545631..1545948 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  ACE6HX_RS07725 (ACE6HX_07725) fliF 1545998..1547590 (+) 1593 WP_034662370.1 flagellar basal-body MS-ring/collar protein FliF -
  ACE6HX_RS07730 (ACE6HX_07730) fliG 1547602..1548618 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  ACE6HX_RS07735 (ACE6HX_07735) fliH 1548611..1549375 (+) 765 WP_034662367.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29019.22 Da        Isoelectric Point: 4.5971

>NTDB_id=1055014 ACE6HX_RS07705 WP_034662375.1 1543711..1544490(+) (codY) [Bacillus pumilus strain X14-67]
MALLQKTRIINSMLQDSAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKGE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1055014 ACE6HX_RS07705 WP_034662375.1 1543711..1544490(+) (codY) [Bacillus pumilus strain X14-67]
ATGGCTTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATTCAGCAGGGAAACCAGTTAATTTTAAAGAAAT
GGCGGAAACACTGAGAGATGTCATTGATTCAAACATTTTTGTGTTGAGTAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAACAGTGAGTATACAGCTTTCCCAATTGAGAACCGTGATTTATTCGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCACTGATGATGATTTAATACTTGCTGAGTACGGAGCAACAGTTGTTGGAATGGAGATCCTTCGTGAAAAAGGAGAA
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTCCTTGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGTGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.981

100

0.95
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.425

98.069

0.475

Multiple sequence alignment