Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BCS84_RS00915 Genome accession   NZ_CP170046
Coordinates   190273..190986 (+) Length   237 a.a.
NCBI ID   WP_016801014.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.222.45.E8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 185273..195986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCS84_RS00900 (BCS84_00900) - 186119..188449 (+) 2331 WP_010433612.1 Tex family protein -
  BCS84_RS00905 (BCS84_00905) - 188574..189047 (-) 474 WP_010433611.1 hypothetical protein -
  BCS84_RS00910 (BCS84_00910) bioH 189403..190179 (-) 777 WP_016784078.1 pimeloyl-ACP methyl ester esterase BioH -
  BCS84_RS00915 (BCS84_00915) comF 190273..190986 (+) 714 WP_016801014.1 ComF family protein Machinery gene
  BCS84_RS00920 (BCS84_00920) nfuA 191097..191681 (+) 585 WP_010433605.1 Fe-S biogenesis protein NfuA -
  BCS84_RS00925 (BCS84_00925) nudE 191964..192515 (+) 552 WP_010433602.1 ADP compounds hydrolase NudE -
  BCS84_RS00930 (BCS84_00930) cysQ 192552..193379 (+) 828 WP_010433599.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BCS84_RS00935 (BCS84_00935) - 193504..194283 (-) 780 WP_029203047.1 type II secretion system protein N -
  BCS84_RS00940 (BCS84_00940) - 194285..194773 (-) 489 WP_016768269.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27259.25 Da        Isoelectric Point: 8.3132

>NTDB_id=1054906 BCS84_RS00915 WP_016801014.1 190273..190986(+) (comF) [Vibrio cyclitrophicus strain 10N.222.45.E8]
MLSDWLQKNTPRLVTPQCHLCKLDKLPNDTHPRWCQSCLDLFCQQPRCQRCGLKTLLTVEQCGQCLSQPPPWHHLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLAPHIQHPAPLITGVPLHWTRYLHRGFNQSQLLAHYTAQELNVKSAVLFRRSR
STDSQQGLTKSARQNNLEDAFTLRNTNFSTNDDSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1054906 BCS84_RS00915 WP_016801014.1 190273..190986(+) (comF) [Vibrio cyclitrophicus strain 10N.222.45.E8]
ATGTTATCTGATTGGCTACAAAAAAACACACCACGCCTGGTCACACCTCAATGCCACCTATGCAAGCTAGACAAACTCCC
CAATGATACTCATCCTCGATGGTGTCAGTCTTGCCTCGATCTCTTTTGCCAACAGCCACGCTGCCAACGATGTGGGTTAA
AAACACTACTCACAGTCGAGCAGTGTGGTCAATGCTTGTCTCAGCCTCCACCTTGGCATCATCTCTATTGTGTAGGTGAC
TACACCTTTCCAACGGCGCGTTATATCCAACAAATGAAATACGCCGATAAGTTCTGGTTCGCTCGCGATCTATCAAAATT
GTTAGCGCCACATATTCAGCACCCAGCGCCTTTGATTACCGGTGTTCCCTTACATTGGACTCGATACCTTCATCGAGGTT
TTAACCAAAGCCAGTTATTGGCACATTACACAGCTCAGGAGCTGAATGTTAAAAGTGCGGTTTTATTTCGTCGATCTCGC
TCAACAGATTCGCAGCAAGGATTAACCAAATCAGCAAGGCAGAACAACCTGGAAGACGCTTTCACGCTGCGCAATACGAA
TTTTTCAACGAACGATGACTCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.085

99.578

0.549
  comF Vibrio campbellii strain DS40M4

48.77

100

0.502

Multiple sequence alignment