Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BCV09_RS14245 Genome accession   NZ_CP170013
Coordinates   3171645..3172358 (+) Length   237 a.a.
NCBI ID   WP_016767854.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.54.C7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3166645..3177358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV09_RS14230 (BCV09_14230) - 3167491..3169821 (+) 2331 WP_016791812.1 Tex family protein -
  BCV09_RS14235 (BCV09_14235) - 3169946..3170419 (-) 474 WP_010433611.1 hypothetical protein -
  BCV09_RS14240 (BCV09_14240) bioH 3170775..3171551 (-) 777 WP_046209425.1 pimeloyl-ACP methyl ester esterase BioH -
  BCV09_RS14245 (BCV09_14245) comF 3171645..3172358 (+) 714 WP_016767854.1 ComF family protein Machinery gene
  BCV09_RS14250 (BCV09_14250) nfuA 3172469..3173053 (+) 585 WP_010433605.1 Fe-S biogenesis protein NfuA -
  BCV09_RS14255 (BCV09_14255) nudE 3173336..3173887 (+) 552 WP_010433602.1 ADP compounds hydrolase NudE -
  BCV09_RS14260 (BCV09_14260) cysQ 3173924..3174751 (+) 828 WP_010433599.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BCV09_RS14265 (BCV09_14265) - 3174876..3175655 (-) 780 WP_157936304.1 type II secretion system protein N -
  BCV09_RS14270 (BCV09_14270) - 3175657..3176145 (-) 489 WP_016768269.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27234.28 Da        Isoelectric Point: 8.5512

>NTDB_id=1054529 BCV09_RS14245 WP_016767854.1 3171645..3172358(+) (comF) [Vibrio cyclitrophicus strain 10N.286.54.C7]
MLSDWLQKNTPRLVTPQCHLCKLDKLPNDTHPRWCQSCLDLFCQQPRCQRCGLKTLLTVEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLAPHIQHPAPLITGVPLHWTRYLHRGFNQSQLLAHYTAQELNVKSAVLFRRSR
STASQQGLTKSARQNNLEDAFTLRNTNFSTNDDSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1054529 BCV09_RS14245 WP_016767854.1 3171645..3172358(+) (comF) [Vibrio cyclitrophicus strain 10N.286.54.C7]
ATGTTATCTGATTGGCTACAAAAAAACACACCACGCCTGGTCACACCTCAGTGCCACCTATGCAAGCTAGACAAACTCCC
CAATGATACTCATCCTCGATGGTGTCAGTCTTGCCTCGATCTCTTTTGCCAACAGCCACGCTGCCAACGATGTGGGTTAA
AAACACTACTCACAGTCGAGCAGTGTGGTCAATGCTTGTCTCAGCCTCCACCTTGGCATCGTCTCTATTGTGTAGGTGAC
TACACCTTTCCAACGGCGCGTTATATCCAACAAATGAAATACGCCGATAAGTTCTGGTTCGCTCGCGATCTATCAAAATT
GTTAGCGCCACATATTCAGCACCCAGCGCCTTTGATTACCGGTGTTCCCTTACATTGGACTCGATACCTTCATCGAGGTT
TTAACCAAAGCCAGTTATTGGCACATTACACAGCTCAGGAGCTGAATGTTAAAAGTGCGGTTTTATTTCGTCGATCTCGA
TCAACAGCTTCGCAGCAAGGATTAACCAAATCAGCAAGGCAGAACAACCTGGAAGACGCTTTCACGCTGCGCAATACGAA
TTTTTCAACGAACGATGACTCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.085

99.578

0.549
  comF Vibrio campbellii strain DS40M4

49.18

100

0.506

Multiple sequence alignment