Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BCV18_RS07160 Genome accession   NZ_CP170009
Coordinates   1592763..1593476 (+) Length   237 a.a.
NCBI ID   WP_322626536.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.54.F2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1587763..1598476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV18_RS07145 (BCV18_07145) - 1588609..1590939 (+) 2331 WP_016767856.1 Tex family protein -
  BCV18_RS07150 (BCV18_07150) - 1591064..1591537 (-) 474 WP_010433611.1 hypothetical protein -
  BCV18_RS07155 (BCV18_07155) bioH 1591893..1592669 (-) 777 WP_102297215.1 pimeloyl-ACP methyl ester esterase BioH -
  BCV18_RS07160 (BCV18_07160) comF 1592763..1593476 (+) 714 WP_322626536.1 ComF family protein Machinery gene
  BCV18_RS07165 (BCV18_07165) nfuA 1593587..1594171 (+) 585 WP_010433605.1 Fe-S biogenesis protein NfuA -
  BCV18_RS07170 (BCV18_07170) nudE 1594454..1595005 (+) 552 WP_010433602.1 ADP compounds hydrolase NudE -
  BCV18_RS07175 (BCV18_07175) cysQ 1595042..1595869 (+) 828 WP_102297218.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BCV18_RS07180 (BCV18_07180) - 1595994..1596773 (-) 780 WP_010433596.1 type II secretion system protein N -
  BCV18_RS07185 (BCV18_07185) - 1596775..1597263 (-) 489 WP_016768269.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27215.24 Da        Isoelectric Point: 8.4339

>NTDB_id=1054412 BCV18_RS07160 WP_322626536.1 1592763..1593476(+) (comF) [Vibrio cyclitrophicus strain 10N.286.54.F2]
MLSDWLQKNTPRLVTPQCHLCKLDKLPNDTHPRWCQSCLDLFCQQPRCQRCGLKTLLTVEQCGQCLSQPPPWHHLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLAPHIQHPAPLITGVPLHWTRYLHRGFNQSQLLAHYTAQELNVKSAVLFRRSR
STASQQGLTKSARQNNLEDAFTLRNTNFSTNDDSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1054412 BCV18_RS07160 WP_322626536.1 1592763..1593476(+) (comF) [Vibrio cyclitrophicus strain 10N.286.54.F2]
ATGTTATCTGATTGGCTACAAAAAAACACACCACGCCTGGTCACACCTCAGTGCCACCTATGCAAGCTAGACAAACTCCC
CAATGATACTCATCCTCGATGGTGTCAGTCTTGCCTCGATCTCTTTTGCCAACAGCCACGCTGCCAACGATGTGGGTTAA
AAACACTACTCACAGTCGAGCAGTGTGGTCAATGCTTGTCTCAGCCTCCACCTTGGCATCATCTCTATTGTGTAGGTGAC
TACACCTTTCCAACGGCGCGTTATATCCAACAAATGAAATACGCCGATAAGTTCTGGTTCGCTCGCGATCTATCAAAATT
GTTAGCGCCACATATTCAGCACCCAGCGCCTTTGATTACCGGTGTTCCCTTACATTGGACTCGATACCTTCATCGAGGTT
TTAACCAAAGCCAGTTATTGGCACATTACACAGCTCAGGAGCTGAATGTTAAAAGTGCGGTTTTATTTCGTCGATCTCGA
TCAACAGCTTCGCAGCAAGGATTAACCAAATCAGCAAGGCAGAACAACCTGGAAGACGCTTTCACGCTGCGCAATACGAA
TTTTTCAACGAACGATGACTCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.085

99.578

0.549
  comF Vibrio campbellii strain DS40M4

48.77

100

0.502

Multiple sequence alignment