Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BCV20_RS14015 Genome accession   NZ_CP170007
Coordinates   3129989..3130702 (+) Length   237 a.a.
NCBI ID   WP_016767854.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.54.F4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3124989..3135702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV20_RS14000 (BCV20_14000) - 3125848..3128178 (+) 2331 WP_010433612.1 Tex family protein -
  BCV20_RS14005 (BCV20_14005) - 3128303..3128776 (-) 474 WP_010433611.1 hypothetical protein -
  BCV20_RS14010 (BCV20_14010) bioH 3129119..3129895 (-) 777 WP_016788497.1 pimeloyl-ACP methyl ester esterase BioH -
  BCV20_RS14015 (BCV20_14015) comF 3129989..3130702 (+) 714 WP_016767854.1 ComF family protein Machinery gene
  BCV20_RS14020 (BCV20_14020) nfuA 3130813..3131397 (+) 585 WP_010433605.1 Fe-S biogenesis protein NfuA -
  BCV20_RS14025 (BCV20_14025) nudE 3131680..3132231 (+) 552 WP_016788496.1 ADP compounds hydrolase NudE -
  BCV20_RS14030 (BCV20_14030) cysQ 3132268..3133095 (+) 828 WP_010433599.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BCV20_RS14035 (BCV20_14035) - 3133220..3133999 (-) 780 WP_029189361.1 type II secretion system protein N -
  BCV20_RS14040 (BCV20_14040) - 3134001..3134489 (-) 489 WP_016768269.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27234.28 Da        Isoelectric Point: 8.5512

>NTDB_id=1054391 BCV20_RS14015 WP_016767854.1 3129989..3130702(+) (comF) [Vibrio cyclitrophicus strain 10N.286.54.F4]
MLSDWLQKNTPRLVTPQCHLCKLDKLPNDTHPRWCQSCLDLFCQQPRCQRCGLKTLLTVEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLAPHIQHPAPLITGVPLHWTRYLHRGFNQSQLLAHYTAQELNVKSAVLFRRSR
STASQQGLTKSARQNNLEDAFTLRNTNFSTNDDSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1054391 BCV20_RS14015 WP_016767854.1 3129989..3130702(+) (comF) [Vibrio cyclitrophicus strain 10N.286.54.F4]
ATGTTATCTGATTGGCTACAAAAAAACACACCACGCCTGGTCACACCTCAGTGCCACCTATGCAAGCTAGACAAACTCCC
CAATGATACTCATCCTCGATGGTGTCAGTCTTGCCTCGATCTCTTTTGCCAACAGCCACGCTGCCAACGATGTGGGTTAA
AAACACTACTCACAGTCGAGCAGTGTGGTCAATGCTTGTCTCAGCCTCCACCTTGGCATCGTCTCTATTGTGTAGGTGAC
TACACCTTTCCAACGGCGCGTTATATCCAACAAATGAAATACGCCGATAAGTTCTGGTTCGCTCGCGATCTATCAAAATT
GTTAGCGCCACATATTCAGCACCCAGCGCCTTTGATTACCGGTGTTCCCTTACATTGGACTCGATACCTTCATCGAGGTT
TTAACCAAAGCCAGTTATTGGCACATTACACAGCTCAGGAGCTGAATGTTAAAAGTGCGGTTTTATTTCGTCGATCTCGA
TCAACAGCTTCGCAGCAAGGGTTAACCAAATCAGCAAGGCAGAACAACCTGGAAGACGCTTTCACGCTGCGCAATACGAA
TTTTTCAACGAACGATGACTCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.085

99.578

0.549
  comF Vibrio campbellii strain DS40M4

49.18

100

0.506

Multiple sequence alignment