Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BCV29_RS10845 Genome accession   NZ_CP170001
Coordinates   2412521..2413234 (-) Length   237 a.a.
NCBI ID   WP_322626536.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.55.B4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2407521..2418234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV29_RS10820 (BCV29_10820) - 2408734..2409222 (+) 489 WP_016768269.1 type II secretion system protein M -
  BCV29_RS10825 (BCV29_10825) - 2409224..2410003 (+) 780 WP_102313345.1 type II secretion system protein N -
  BCV29_RS10830 (BCV29_10830) cysQ 2410128..2410955 (-) 828 WP_010433599.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BCV29_RS10835 (BCV29_10835) nudE 2410992..2411543 (-) 552 WP_010433602.1 ADP compounds hydrolase NudE -
  BCV29_RS10840 (BCV29_10840) nfuA 2411826..2412410 (-) 585 WP_010433605.1 Fe-S biogenesis protein NfuA -
  BCV29_RS10845 (BCV29_10845) comF 2412521..2413234 (-) 714 WP_322626536.1 ComF family protein Machinery gene
  BCV29_RS10850 (BCV29_10850) bioH 2413328..2414104 (+) 777 WP_102313346.1 pimeloyl-ACP methyl ester esterase BioH -
  BCV29_RS10855 (BCV29_10855) - 2414460..2414933 (+) 474 WP_010433611.1 hypothetical protein -
  BCV29_RS10860 (BCV29_10860) - 2415058..2417388 (-) 2331 WP_010433612.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27215.24 Da        Isoelectric Point: 8.4339

>NTDB_id=1054298 BCV29_RS10845 WP_322626536.1 2412521..2413234(-) (comF) [Vibrio cyclitrophicus strain 10N.286.55.B4]
MLSDWLQKNTPRLVTPQCHLCKLDKLPNDTHPRWCQSCLDLFCQQPRCQRCGLKTLLTVEQCGQCLSQPPPWHHLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLAPHIQHPAPLITGVPLHWTRYLHRGFNQSQLLAHYTAQELNVKSAVLFRRSR
STASQQGLTKSARQNNLEDAFTLRNTNFSTNDDSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1054298 BCV29_RS10845 WP_322626536.1 2412521..2413234(-) (comF) [Vibrio cyclitrophicus strain 10N.286.55.B4]
ATGTTATCTGATTGGCTACAAAAAAACACACCACGCCTGGTCACACCTCAGTGCCACCTATGCAAGCTAGACAAACTCCC
CAATGATACTCATCCTCGATGGTGTCAGTCTTGCCTCGATCTCTTTTGCCAACAGCCACGCTGCCAACGATGTGGGTTAA
AAACACTACTCACAGTCGAGCAGTGTGGTCAATGCTTGTCTCAGCCTCCACCTTGGCATCATCTCTATTGTGTAGGTGAC
TACACCTTTCCAACGGCGCGTTATATCCAACAAATGAAATACGCCGATAAGTTCTGGTTCGCTCGCGATCTATCAAAATT
GTTAGCGCCACATATTCAGCACCCAGCGCCTTTGATTACCGGTGTTCCCTTACATTGGACTCGATACCTTCATCGAGGTT
TTAACCAAAGCCAGTTATTGGCACATTACACAGCTCAGGAGCTGAATGTTAAAAGTGCGGTTTTATTTCGTCGATCTCGA
TCAACAGCTTCGCAGCAAGGATTAACCAAATCAGCAAGGCAGAACAACCTGGAAGACGCTTTCACGCTGCGCAATACGAA
TTTTTCAACGAACGATGACTCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.085

99.578

0.549
  comF Vibrio campbellii strain DS40M4

48.77

100

0.502

Multiple sequence alignment