Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8608_RS07370 Genome accession   NZ_AP028398
Coordinates   1414031..1414546 (-) Length   171 a.a.
NCBI ID   WP_038816943.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11511     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1409031..1419546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8608_RS07355 (B11511_14730) - 1409133..1410950 (-) 1818 WP_272900326.1 motility associated factor glycosyltransferase family protein -
  R8608_RS07360 (B11511_14740) - 1410947..1412770 (-) 1824 WP_317647946.1 motility associated factor glycosyltransferase family protein -
  R8608_RS07365 - 1412780..1414031 (-) 1252 Protein_1439 DUF2920 family protein -
  R8608_RS07370 (B11511_14770) ctsG 1414031..1414546 (-) 516 WP_038816943.1 type II secretion system protein Machinery gene
  R8608_RS07375 (B11511_14780) tsaD 1414547..1415554 (-) 1008 WP_038816944.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8608_RS07380 (B11511_14790) - 1415551..1416945 (-) 1395 WP_052788783.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8608_RS07385 (B11511_14800) dxr 1416947..1418017 (-) 1071 WP_002902410.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8608_RS07390 (B11511_14810) cdsA 1418014..1418739 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  R8608_RS07395 (B11511_14820) - 1418748..1419086 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18664.58 Da        Isoelectric Point: 7.1355

>NTDB_id=105419 R8608_RS07370 WP_038816943.1 1414031..1414546(-) (ctsG) [Campylobacter jejuni strain BCH-11511]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKKDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105419 R8608_RS07370 WP_038816943.1 1414031..1414546(-) (ctsG) [Campylobacter jejuni strain BCH-11511]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAAGGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment