Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACNUDX_RS11925 Genome accession   NZ_OZ197084
Coordinates   2397968..2398741 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus isolate 23S01952-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2392968..2403741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDX_RS11890 - 2393221..2393991 (-) 771 WP_000473705.1 isoprenyl transferase -
  ACNUDX_RS11895 frr 2394364..2394918 (-) 555 WP_001280006.1 ribosome recycling factor -
  ACNUDX_RS11900 pyrH 2394937..2395659 (-) 723 WP_000057330.1 UMP kinase -
  ACNUDX_RS11905 tsf 2395796..2396677 (-) 882 WP_000201387.1 translation elongation factor Ts -
  ACNUDX_RS11910 - 2396712..2396825 (-) 114 WP_001789890.1 hypothetical protein -
  ACNUDX_RS11915 rpsB 2396859..2397626 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACNUDX_RS11920 - 2397825..2397917 (-) 93 WP_001790530.1 hypothetical protein -
  ACNUDX_RS11925 codY 2397968..2398741 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACNUDX_RS11930 hslU 2398766..2400169 (-) 1404 WP_416743135.1 ATP-dependent protease ATPase subunit HslU -
  ACNUDX_RS11935 hslV 2400235..2400780 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACNUDX_RS11940 xerC 2400777..2401673 (-) 897 WP_001015606.1 tyrosine recombinase XerC -
  ACNUDX_RS11945 trmFO 2402090..2403397 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=1054010 ACNUDX_RS11925 WP_000055337.1 2397968..2398741(-) (codY) [Staphylococcus aureus isolate 23S01952-1]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1054010 ACNUDX_RS11925 WP_000055337.1 2397968..2398741(-) (codY) [Staphylococcus aureus isolate 23S01952-1]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428