Detailed information NTG1053968

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACEZ45_RS08160
• Genome accession: NZ_CP169877
• Coordinates: 1610618..1611397 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain JF
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1605618..1616397

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEZ45_RS08140 (ACEZ45_08140)	trmFO	1606305..1607612 (+)	1308	WP_003154273.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACEZ45_RS08145 (ACEZ45_08145)	xerC	1607682..1608599 (+)	918	WP_043867088.1	tyrosine recombinase XerC	-
ACEZ45_RS08150 (ACEZ45_08150)	hslV	1608615..1609160 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACEZ45_RS08155 (ACEZ45_08155)	hslU	1609177..1610580 (+)	1404	WP_014305002.1	HslU--HslV peptidase ATPase subunit	-
ACEZ45_RS08160 (ACEZ45_08160)	codY	1610618..1611397 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACEZ45_RS08165 (ACEZ45_08165)	flgB	1611751..1612140 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACEZ45_RS08170 (ACEZ45_08170)	flgC	1612140..1612592 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ACEZ45_RS08175 (ACEZ45_08175)	fliE	1612603..1612923 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACEZ45_RS08180 (ACEZ45_08180)	fliF	1612966..1614576 (+)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
ACEZ45_RS08185 (ACEZ45_08185)	fliG	1614589..1615605 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACEZ45_RS08190 (ACEZ45_08190)	fliH	1615598..1616353 (+)	756	WP_060386938.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1053968 ACEZ45_RS08160 WP_003154263.1 1610618..1611397(+) (codY) [Bacillus amyloliquefaciens strain JF]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1053968 ACEZ45_RS08160 WP_003154263.1 1610618..1611397(+) (codY) [Bacillus amyloliquefaciens strain JF]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471