Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ABUS19_RS17480 Genome accession   NZ_CP169872
Coordinates   3682765..3683325 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Up377     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3677765..3688325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS19_RS17470 pilX 3680948..3681766 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABUS19_RS17475 pilW 3681763..3682764 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABUS19_RS17480 pilV 3682765..3683325 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABUS19_RS17485 fimU 3683319..3683792 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS19_RS17490 ispH 3683962..3684912 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS19_RS17495 gmk 3685035..3685664 (+) 630 WP_000015937.1 guanylate kinase -
  ABUS19_RS17500 rpoZ 3685737..3686015 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS19_RS17505 - 3686054..3686184 (+) 131 Protein_3418 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=1053926 ABUS19_RS17480 WP_002194578.1 3682765..3683325(-) (pilV) [Acinetobacter baumannii strain Up377]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1053926 ABUS19_RS17480 WP_002194578.1 3682765..3683325(-) (pilV) [Acinetobacter baumannii strain Up377]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414

Multiple sequence alignment