Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABUS19_RS17455 Genome accession   NZ_CP169872
Coordinates   3676165..3676590 (-) Length   141 a.a.
NCBI ID   WP_000788337.1    Uniprot ID   A0A009SG52
Organism   Acinetobacter baumannii strain Up377     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3671165..3681590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS19_RS17425 - 3671697..3672728 (+) 1032 Protein_3402 lipase secretion chaperone -
  ABUS19_RS17430 - 3672843..3673784 (+) 942 WP_085943974.1 triacylglycerol lipase -
  ABUS19_RS17435 rplS 3673837..3674205 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABUS19_RS17440 trmD 3674413..3675153 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABUS19_RS17445 rimM 3675199..3675747 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  ABUS19_RS17450 rpsP 3675767..3676018 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABUS19_RS17455 pilE 3676165..3676590 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  ABUS19_RS17460 pilY2 3676587..3677069 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  ABUS19_RS17465 pilY1 3677082..3680936 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15163.36 Da        Isoelectric Point: 7.8144

>NTDB_id=1053921 ABUS19_RS17455 WP_000788337.1 3676165..3676590(-) (pilE) [Acinetobacter baumannii strain Up377]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1053921 ABUS19_RS17455 WP_000788337.1 3676165..3676590(-) (pilE) [Acinetobacter baumannii strain Up377]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACATTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCATTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

90.78

100

0.908
  comF Acinetobacter baylyi ADP1

50

99.291

0.496

Multiple sequence alignment