Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8952_RS07035 Genome accession   NZ_AP028396
Coordinates   1376066..1376581 (-) Length   171 a.a.
NCBI ID   WP_002875972.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11505     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1371066..1381581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8952_RS07020 (B11505_13870) - 1371175..1372992 (-) 1818 WP_317729558.1 motility associated factor glycosyltransferase family protein -
  R8952_RS07025 (B11505_13880) - 1372989..1374812 (-) 1824 WP_052949021.1 motility associated factor glycosyltransferase family protein -
  R8952_RS07030 (B11505_13890) - 1374822..1376066 (-) 1245 WP_002934876.1 DUF2920 family protein -
  R8952_RS07035 (B11505_13900) ctsG 1376066..1376581 (-) 516 WP_002875972.1 type II secretion system protein Machinery gene
  R8952_RS07040 (B11505_13910) tsaD 1376582..1377589 (-) 1008 WP_002875973.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8952_RS07045 (B11505_13920) - 1377586..1378980 (-) 1395 WP_240693940.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8952_RS07050 (B11505_13930) dxr 1378982..1380052 (-) 1071 WP_100620015.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8952_RS07055 (B11505_13940) cdsA 1380049..1380774 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  R8952_RS07060 (B11505_13950) - 1380783..1381121 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18693.49 Da        Isoelectric Point: 5.7789

>NTDB_id=105392 R8952_RS07035 WP_002875972.1 1376066..1376581(-) (ctsG) [Campylobacter jejuni strain BCH-11505]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105392 R8952_RS07035 WP_002875972.1 1376066..1376581(-) (ctsG) [Campylobacter jejuni strain BCH-11505]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment