Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABUS33_RS15850 Genome accession   NZ_CP169842
Coordinates   3268394..3268819 (-) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain Rp428     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3263394..3273819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS33_RS15820 - 3263923..3264957 (+) 1035 WP_001189451.1 lipase secretion chaperone -
  ABUS33_RS15825 - 3265072..3266013 (+) 942 WP_085943440.1 triacylglycerol lipase -
  ABUS33_RS15830 rplS 3266066..3266434 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABUS33_RS15835 trmD 3266642..3267382 (-) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABUS33_RS15840 rimM 3267428..3267976 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  ABUS33_RS15845 rpsP 3267996..3268247 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABUS33_RS15850 pilE 3268394..3268819 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ABUS33_RS15855 pilY2 3268816..3269298 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ABUS33_RS15860 pilY1 3269311..3273165 (-) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=1053639 ABUS33_RS15850 WP_000788342.1 3268394..3268819(-) (pilE) [Acinetobacter baumannii strain Rp428]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1053639 ABUS33_RS15850 WP_000788342.1 3268394..3268819(-) (pilE) [Acinetobacter baumannii strain Rp428]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518

Multiple sequence alignment