Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACFZP9_RS07660 Genome accession   NZ_OZ186791
Coordinates   1763025..1764380 (-) Length   451 a.a.
NCBI ID   WP_030973192.1    Uniprot ID   A0ABW7EFE1
Organism   Streptomyces sp. SudanB135_2055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1758025..1769380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFZP9_RS07640 (SUDANB135_01522) - 1758920..1759276 (-) 357 WP_019325087.1 hypothetical protein -
  ACFZP9_RS07645 (SUDANB135_01523) - 1759284..1759727 (-) 444 WP_019325088.1 DUF948 domain-containing protein -
  ACFZP9_RS07650 (SUDANB135_01524) - 1759900..1762089 (+) 2190 WP_175462773.1 AAA family ATPase -
  ACFZP9_RS07655 (SUDANB135_01525) rpsD 1762121..1762735 (-) 615 WP_030973190.1 30S ribosomal protein S4 -
  ACFZP9_RS07660 (SUDANB135_01526) rarA 1763025..1764380 (-) 1356 WP_030973192.1 replication-associated recombination protein A Machinery gene
  ACFZP9_RS07665 (SUDANB135_01527) - 1764437..1765099 (-) 663 WP_030973194.1 vitamin K epoxide reductase family protein -
  ACFZP9_RS07670 (SUDANB135_01528) hisS 1765294..1766556 (-) 1263 WP_019325093.1 histidine--tRNA ligase -
  ACFZP9_RS07675 (SUDANB135_01529) - 1766570..1767277 (-) 708 WP_029393163.1 MBL fold metallo-hydrolase -
  ACFZP9_RS07680 (SUDANB135_01530) - 1767461..1768285 (+) 825 WP_030973196.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48176.54 Da        Isoelectric Point: 6.4507

>NTDB_id=1053451 ACFZP9_RS07660 WP_030973192.1 1763025..1764380(-) (rarA) [Streptomyces sp. SudanB135_2055]
MEPDLFTAAAEERQEKDPTGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGGSGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRAVGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDVRGLLRRALTDERGLKEAVTLPEDTEDHLLRIAGGDARRALTALEAAAGAALDKGEAE
VTLATLEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAALDDVRKGHAGPVPAHLRDSHYKGAGKLGHGQGYVY
PHDLPEGIAAQQYAPDELKDRTYYTPTRHGAEARYADAVEWTRGHLGRKRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=1053451 ACFZP9_RS07660 WP_030973192.1 1763025..1764380(-) (rarA) [Streptomyces sp. SudanB135_2055]
GTGGAGCCCGACCTGTTCACCGCCGCAGCCGAAGAACGCCAGGAGAAGGACCCGACCGGCAGCCCCCTCGCCGTCCGGAT
GCGTCCGCGCACCCTCGACGAGGTCGTCGGCCAGCAGCACCTGCTCAAGCCCGGATCGCCCCTGCGCCGACTCGTCGGCG
AGGGAGGCTCCGGCCCCGCCGGACCCTCCTCGGTCATCCTCTGGGGGCCGCCCGGCACCGGCAAGACCACCCTGGCGTAC
GTCGTCTCCAAGGCCACCAACAAGCGCTTCGTGGAGCTGTCGGCGATCACCGCGGGCGTCAAGGAGGTCCGCGCGGTCAT
CGACGGCGCCCGCCGCGCGGTCGGCGGGTACGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTCCTCCCGGCGGTCGAGAACCGCTGGGTCACCCTGATCGCCGCCACCACGGAGAACCCGTACTTC
TCGGTGATCTCCCCGCTGCTCTCCCGCTCCCTCCTCCTCACCCTCGAACCTCTCACCGACGACGACGTCCGGGGCCTGCT
CCGCCGGGCGCTGACCGACGAGCGGGGCCTCAAGGAAGCCGTCACGCTCCCCGAGGACACCGAGGACCACCTGCTGCGCA
TCGCCGGCGGCGACGCCCGCCGCGCGCTGACCGCGCTGGAGGCCGCCGCCGGGGCCGCGCTCGACAAGGGCGAGGCCGAG
GTCACCCTGGCGACGCTGGAGGCGACCGTCGACCGGGCCGCGGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCCAGTGCCCTGATCAAGTCCATCCGCGGCTCCGACGTGGACGCGGCCCTGCACTACCTGGCCCGGATGATCGAGGCCG
GCGAGGACCCGCGCTTCATCGCCCGCCGCCTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGACCCGAACGCCCTG
CCGATCGCCGTCGCCGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCCGAGGCCGCCCTCACCCTCAGCCACGCCACCAT
CGCCCTGGCGCTGGCCCCCAAGTCCAACGCGGCGACGACGGCCATCGGCGCCGCCCTGGACGACGTGCGCAAGGGACACG
CGGGGCCGGTCCCCGCGCACCTGCGCGACAGCCACTACAAGGGCGCCGGAAAGCTCGGACACGGGCAGGGGTACGTGTAC
CCGCACGACCTGCCGGAGGGCATCGCCGCCCAGCAGTACGCCCCGGACGAGCTGAAGGACCGCACCTACTACACCCCGAC
CCGGCACGGCGCCGAGGCCCGATACGCGGACGCCGTGGAGTGGACCCGCGGTCACCTCGGTCGCAAGCGGTCCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.88

96.009

0.421

Multiple sequence alignment