Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS42_RS00960 Genome accession   NZ_CP169819
Coordinates   200156..200857 (-) Length   233 a.a.
NCBI ID   WP_000594590.1    Uniprot ID   A0A427R546
Organism   Acinetobacter baumannii strain Lv419     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 195156..205857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS42_RS00930 - 195462..195905 (-) 444 WP_001246674.1 SRPBCC family protein -
  ABUS42_RS00935 tadA 195975..196478 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  ABUS42_RS00940 - 196485..197609 (-) 1125 WP_086241960.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS42_RS00945 ung 197606..198319 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  ABUS42_RS00950 - 198370..198966 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  ABUS42_RS00955 gspK 199197..200156 (-) 960 WP_000301471.1 type II secretion system minor pseudopilin GspK -
  ABUS42_RS00960 xcpW 200156..200857 (-) 702 WP_000594590.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS42_RS00965 xcpV 200857..201237 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS42_RS00970 - 201227..201781 (-) 555 WP_000841373.1 type II secretion system protein -
  ABUS42_RS00975 - 201791..202399 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS42_RS00980 - 202437..203210 (-) 774 WP_000497301.1 TatD family hydrolase -
  ABUS42_RS00985 - 203228..203569 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  ABUS42_RS00990 - 203581..204561 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ABUS42_RS00995 kdsB 204573..205334 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26627.52 Da        Isoelectric Point: 9.3468

>NTDB_id=1053367 ABUS42_RS00960 WP_000594590.1 200156..200857(-) (xcpW) [Acinetobacter baumannii strain Lv419]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWTYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1053367 ABUS42_RS00960 WP_000594590.1 200156..200857(-) (xcpW) [Acinetobacter baumannii strain Lv419]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGACTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427R546

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991

Multiple sequence alignment