Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABUS27_RS01710 Genome accession   NZ_CP169811
Coordinates   368579..369004 (+) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain Lv371     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 363579..374004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS27_RS01700 pilY1 364233..368087 (+) 3855 WP_000768956.1 PilC/PilY family type IV pilus protein Machinery gene
  ABUS27_RS01705 pilY2 368100..368582 (+) 483 WP_001046415.1 type IV pilin protein Machinery gene
  ABUS27_RS01710 pilE 368579..369004 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ABUS27_RS01715 rpsP 369151..369402 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABUS27_RS01720 rimM 369422..369970 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  ABUS27_RS01725 trmD 370016..370756 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABUS27_RS01730 rplS 370964..371332 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABUS27_RS01735 - 371385..372326 (-) 942 WP_086321537.1 triacylglycerol lipase -
  ABUS27_RS01740 - 372441..373472 (-) 1032 WP_001189454.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=1053332 ABUS27_RS01710 WP_000788342.1 368579..369004(+) (pilE) [Acinetobacter baumannii strain Lv371]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1053332 ABUS27_RS01710 WP_000788342.1 368579..369004(+) (pilE) [Acinetobacter baumannii strain Lv371]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518

Multiple sequence alignment