Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SPAP1_RS08905 Genome accession   NZ_CP007537
Coordinates   1730128..1731396 (+) Length   422 a.a.
NCBI ID   WP_029714155.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain AP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1725128..1736396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAP1_RS08880 (SPAP1_08870) - 1725296..1726045 (-) 750 WP_010922697.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SPAP1_RS08885 (SPAP1_08875) prmA 1726045..1726998 (-) 954 WP_010922698.1 50S ribosomal protein L11 methyltransferase -
  SPAP1_RS08890 (SPAP1_08880) - 1727069..1727539 (-) 471 WP_011285734.1 DUF3013 family protein -
  SPAP1_RS08895 (SPAP1_08885) pabB 1727739..1729496 (+) 1758 WP_010922700.1 aminodeoxychorismate synthase component I -
  SPAP1_RS08900 (SPAP1_08890) - 1729529..1730095 (+) 567 WP_010922701.1 aminodeoxychorismate/anthranilate synthase component II -
  SPAP1_RS08905 (SPAP1_08895) rarA 1730128..1731396 (+) 1269 WP_029714155.1 replication-associated recombination protein A Machinery gene
  SPAP1_RS08915 (SPAP1_08905) - 1731893..1732333 (+) 441 WP_010922703.1 GNAT family N-acetyltransferase -
  SPAP1_RS08920 (SPAP1_08910) - 1732388..1732894 (+) 507 WP_010922704.1 DNA topology modulation protein -
  SPAP1_RS08925 (SPAP1_08915) smeZ 1733143..1733844 (+) 702 WP_010922705.1 streptococcal mitogenic exotoxin SmeZ -
  SPAP1_RS08930 (SPAP1_08920) - 1734128..1734394 (-) 267 WP_011285736.1 hypothetical protein -
  SPAP1_RS08935 (SPAP1_08925) - 1734573..1736201 (+) 1629 WP_010922707.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46629.07 Da        Isoelectric Point: 6.3774

>NTDB_id=105328 SPAP1_RS08905 WP_029714155.1 1730128..1731396(+) (rarA) [Streptococcus pyogenes strain AP1]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWLKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=105328 SPAP1_RS08905 WP_029714155.1 1730128..1731396(+) (rarA) [Streptococcus pyogenes strain AP1]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAAATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGTC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCCAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
CAACCTCCCCATTCCAAGACATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGCTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59

Multiple sequence alignment