Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS34_RS08700 Genome accession   NZ_CP169801
Coordinates   1794387..1795088 (+) Length   233 a.a.
NCBI ID   WP_000594580.1    Uniprot ID   A0A836YMN8
Organism   Acinetobacter baumannii strain Hv782     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1789387..1800088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS34_RS08665 kdsB 1789910..1790671 (+) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABUS34_RS08670 - 1790683..1791663 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ABUS34_RS08675 - 1791675..1792016 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  ABUS34_RS08680 - 1792034..1792807 (+) 774 WP_000497298.1 TatD family hydrolase -
  ABUS34_RS08685 - 1792845..1793453 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS34_RS08690 - 1793463..1794017 (+) 555 WP_000841367.1 type II secretion system protein -
  ABUS34_RS08695 xcpV 1794007..1794387 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS34_RS08700 xcpW 1794387..1795088 (+) 702 WP_000594580.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS34_RS08705 gspK 1795088..1796047 (+) 960 WP_031960447.1 type II secretion system minor pseudopilin GspK -
  ABUS34_RS08710 - 1796277..1796873 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  ABUS34_RS08715 ung 1796924..1797637 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  ABUS34_RS08720 - 1797634..1798758 (+) 1125 WP_109067466.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS34_RS08725 tadA 1798765..1799268 (+) 504 WP_031960449.1 tRNA adenosine(34) deaminase TadA -
  ABUS34_RS08730 - 1799338..1799781 (+) 444 WP_031960450.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26673.64 Da        Isoelectric Point: 9.5501

>NTDB_id=1053209 ABUS34_RS08700 WP_000594580.1 1794387..1795088(+) (xcpW) [Acinetobacter baumannii strain Hv782]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1053209 ABUS34_RS08700 WP_000594580.1 1794387..1795088(+) (xcpW) [Acinetobacter baumannii strain Hv782]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836YMN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

98.712

100

0.987

Multiple sequence alignment