Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS26_RS10065 Genome accession   NZ_CP169795
Coordinates   2123804..2124505 (-) Length   233 a.a.
NCBI ID   WP_000594580.1    Uniprot ID   A0A836YMN8
Organism   Acinetobacter baumannii strain Hv780     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2118804..2129505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS26_RS10035 - 2119111..2119554 (-) 444 WP_031960450.1 SRPBCC family protein -
  ABUS26_RS10040 tadA 2119624..2120127 (-) 504 WP_031960449.1 tRNA adenosine(34) deaminase TadA -
  ABUS26_RS10045 - 2120134..2121258 (-) 1125 WP_109067466.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS26_RS10050 ung 2121255..2121968 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  ABUS26_RS10055 - 2122019..2122615 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  ABUS26_RS10060 gspK 2122845..2123804 (-) 960 WP_031960447.1 type II secretion system minor pseudopilin GspK -
  ABUS26_RS10065 xcpW 2123804..2124505 (-) 702 WP_000594580.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS26_RS10070 xcpV 2124505..2124885 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS26_RS10075 - 2124875..2125429 (-) 555 WP_000841367.1 type II secretion system protein -
  ABUS26_RS10080 - 2125439..2126047 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS26_RS10085 - 2126085..2126858 (-) 774 WP_000497298.1 TatD family hydrolase -
  ABUS26_RS10090 - 2126876..2127217 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  ABUS26_RS10095 - 2127229..2128209 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ABUS26_RS10100 kdsB 2128221..2128982 (-) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26673.64 Da        Isoelectric Point: 9.5501

>NTDB_id=1053117 ABUS26_RS10065 WP_000594580.1 2123804..2124505(-) (xcpW) [Acinetobacter baumannii strain Hv780]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1053117 ABUS26_RS10065 WP_000594580.1 2123804..2124505(-) (xcpW) [Acinetobacter baumannii strain Hv780]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836YMN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

98.712

100

0.987

Multiple sequence alignment