Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8902_RS06475 Genome accession   NZ_AP028388
Coordinates   1264604..1265119 (-) Length   171 a.a.
NCBI ID   WP_249619076.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11399     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1259604..1270119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8902_RS06460 (B11399_12650) - 1259714..1261435 (-) 1722 WP_317726444.1 flagellin A -
  R8902_RS06465 (B11399_12660) - 1261523..1263343 (-) 1821 WP_249619078.1 motility associated factor glycosyltransferase family protein -
  R8902_RS06470 - 1263355..1264604 (-) 1250 Protein_1257 DUF2920 family protein -
  R8902_RS06475 (B11399_12690) ctsG 1264604..1265119 (-) 516 WP_249619076.1 type II secretion system protein Machinery gene
  R8902_RS06480 (B11399_12700) tsaD 1265120..1266127 (-) 1008 WP_249619075.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8902_RS06485 (B11399_12710) - 1266124..1267518 (-) 1395 WP_249619074.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8902_RS06490 (B11399_12720) dxr 1267520..1268590 (-) 1071 WP_002869325.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8902_RS06495 (B11399_12730) cdsA 1268587..1269312 (-) 726 WP_002869324.1 phosphatidate cytidylyltransferase -
  R8902_RS06500 (B11399_12740) - 1269321..1269659 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18756.68 Da        Isoelectric Point: 8.4925

>NTDB_id=105311 R8902_RS06475 WP_249619076.1 1264604..1265119(-) (ctsG) [Campylobacter jejuni strain BCH-11399]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLNSIKTMSNVSGVENVDLSN
FNGTKEVNFRVGDDKKCLKLVFINKVDFILMGISSNEASKNAIINAANQSHEDLENVHFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105311 R8902_RS06475 WP_249619076.1 1264604..1265119(-) (ctsG) [Campylobacter jejuni strain BCH-11399]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCTGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAACTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTAGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAAAATGCTTAAAACTTGTTTTTATAAATAAAGTAGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATGTACACTTTACAAGCTCTTCAAGCAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGCAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

97.661

100

0.977

Multiple sequence alignment