Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8631_RS07345 Genome accession   NZ_AP028387
Coordinates   1407479..1407994 (-) Length   171 a.a.
NCBI ID   WP_317647872.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11353     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1402479..1412994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8631_RS07330 (B11353_14810) - 1402585..1404402 (-) 1818 WP_317647867.1 motility associated factor glycosyltransferase family protein -
  R8631_RS07335 (B11353_14820) - 1404402..1406222 (-) 1821 WP_317647869.1 motility associated factor glycosyltransferase family protein -
  R8631_RS07340 (B11353_14830) - 1406232..1407479 (-) 1248 WP_317647871.1 DUF2920 family protein -
  R8631_RS07345 (B11353_14840) ctsG 1407479..1407994 (-) 516 WP_317647872.1 type II secretion system protein Machinery gene
  R8631_RS07350 (B11353_14850) tsaD 1407995..1409002 (-) 1008 WP_308043375.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8631_RS07355 (B11353_14860) - 1408999..1410393 (-) 1395 WP_002882704.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8631_RS07360 (B11353_14870) dxr 1410395..1411465 (-) 1071 WP_308042954.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8631_RS07365 (B11353_14880) cdsA 1411462..1412187 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  R8631_RS07370 (B11353_14890) - 1412196..1412534 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18805.56 Da        Isoelectric Point: 6.4701

>NTDB_id=105284 R8631_RS07345 WP_317647872.1 1407479..1407994(-) (ctsG) [Campylobacter jejuni strain BCH-11353]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENADLSN
FNGTKEVNFRVGDDKECLKLLFIDRADFILMGISSNEASKNAIINAANQTHEDLENVDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGQR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105284 R8631_RS07345 WP_317647872.1 1407479..1407994(-) (ctsG) [Campylobacter jejuni strain BCH-11353]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCGGAGGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGACATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCCATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGCCGATCTTAGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAGATAGAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCCATCATCAACGCAGCCAATCAGACTCATGAAGATT
TAGAAAATGTAGATTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGCAAAACTTATCTTTTAATAGGACAAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.491

98.83

0.924

Multiple sequence alignment