Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8665_RS07010 Genome accession   NZ_AP028386
Coordinates   1344949..1345464 (-) Length   171 a.a.
NCBI ID   WP_052804293.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11348     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1339949..1350464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8665_RS06995 (B11348_13690) - 1340066..1341880 (-) 1815 WP_317676837.1 motility associated factor glycosyltransferase family protein -
  R8665_RS07000 (B11348_13700) - 1341877..1343700 (-) 1824 WP_317676838.1 motility associated factor glycosyltransferase family protein -
  R8665_RS07005 - 1343710..1344949 (-) 1240 Protein_1363 DUF2920 family protein -
  R8665_RS07010 (B11348_13730) ctsG 1344949..1345464 (-) 516 WP_052804293.1 type II secretion system protein Machinery gene
  R8665_RS07015 (B11348_13740) tsaD 1345465..1346472 (-) 1008 WP_317676839.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8665_RS07020 (B11348_13750) - 1346469..1347863 (-) 1395 WP_038816945.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8665_RS07025 (B11348_13760) dxr 1347865..1348935 (-) 1071 WP_317676840.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8665_RS07030 (B11348_13770) cdsA 1348932..1349657 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  R8665_RS07035 (B11348_13780) - 1349666..1350004 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18665.48 Da        Isoelectric Point: 5.7789

>NTDB_id=105256 R8665_RS07010 WP_052804293.1 1344949..1345464(-) (ctsG) [Campylobacter jejuni strain BCH-11348]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105256 R8665_RS07010 WP_052804293.1 1344949..1345464(-) (ctsG) [Campylobacter jejuni strain BCH-11348]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTAATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment