Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACEPM6_RS04055 Genome accession   NZ_CP169570
Coordinates   798946..799725 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain CIMT3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 793946..804725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPM6_RS04035 (ACEPM6_04035) trmFO 794633..795940 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACEPM6_RS04040 (ACEPM6_04040) xerC 796010..796927 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  ACEPM6_RS04045 (ACEPM6_04045) hslV 796943..797488 (+) 546 WP_022553348.1 ATP-dependent protease subunit HslV -
  ACEPM6_RS04050 (ACEPM6_04050) hslU 797505..798908 (+) 1404 WP_375156447.1 HslU--HslV peptidase ATPase subunit -
  ACEPM6_RS04055 (ACEPM6_04055) codY 798946..799725 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACEPM6_RS04060 (ACEPM6_04060) flgB 800079..800468 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  ACEPM6_RS04065 (ACEPM6_04065) flgC 800468..800920 (+) 453 WP_022553347.1 flagellar basal body rod protein FlgC -
  ACEPM6_RS04070 (ACEPM6_04070) fliE 800931..801251 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  ACEPM6_RS04075 (ACEPM6_04075) fliF 801294..802904 (+) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  ACEPM6_RS04080 (ACEPM6_04080) fliG 802917..803933 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  ACEPM6_RS04085 (ACEPM6_04085) fliH 803926..804681 (+) 756 WP_022553345.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1052312 ACEPM6_RS04055 WP_003154263.1 798946..799725(+) (codY) [Bacillus velezensis strain CIMT3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1052312 ACEPM6_RS04055 WP_003154263.1 798946..799725(+) (codY) [Bacillus velezensis strain CIMT3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCAGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment