Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACE4RD_RS11795 Genome accession   NZ_OZ059823
Coordinates   2376094..2376867 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus isolate E2_22S00623-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2371094..2381867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RD_RS11760 - 2371347..2372117 (-) 771 WP_000473705.1 isoprenyl transferase -
  ACE4RD_RS11765 frr 2372490..2373044 (-) 555 WP_001280006.1 ribosome recycling factor -
  ACE4RD_RS11770 pyrH 2373063..2373785 (-) 723 WP_000057330.1 UMP kinase -
  ACE4RD_RS11775 tsf 2373922..2374803 (-) 882 WP_000201387.1 translation elongation factor Ts -
  ACE4RD_RS11780 - 2374838..2374951 (-) 114 WP_001789890.1 hypothetical protein -
  ACE4RD_RS11785 rpsB 2374985..2375752 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACE4RD_RS11790 - 2375951..2376043 (-) 93 WP_001790530.1 hypothetical protein -
  ACE4RD_RS11795 codY 2376094..2376867 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACE4RD_RS11800 hslU 2376892..2378295 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACE4RD_RS11805 hslV 2378361..2378906 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACE4RD_RS11810 xerC 2378903..2379799 (-) 897 WP_001015606.1 tyrosine recombinase XerC -
  ACE4RD_RS11815 trmFO 2380216..2381523 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=1052290 ACE4RD_RS11795 WP_000055337.1 2376094..2376867(-) (codY) [Staphylococcus aureus isolate E2_22S00623-1]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1052290 ACE4RD_RS11795 WP_000055337.1 2376094..2376867(-) (codY) [Staphylococcus aureus isolate E2_22S00623-1]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428