Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8610_RS06580 Genome accession   NZ_AP028384
Coordinates   1292865..1293380 (-) Length   171 a.a.
NCBI ID   WP_002921112.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11253     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1287865..1298380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8610_RS06565 (B11253_12940) - 1287980..1289794 (-) 1815 WP_317652985.1 motility associated factor glycosyltransferase family protein -
  R8610_RS06570 (B11253_12950) - 1289791..1291614 (-) 1824 WP_115769325.1 motility associated factor glycosyltransferase family protein -
  R8610_RS08955 (B11253_12960) - 1291611..1292285 (-) 675 WP_079264331.1 DUF2920 family protein -
  R8610_RS08960 (B11253_12970) - 1292275..1292865 (-) 591 WP_411515358.1 DUF2920 family protein -
  R8610_RS06580 (B11253_12980) ctsG 1292865..1293380 (-) 516 WP_002921112.1 type II secretion system protein Machinery gene
  R8610_RS06585 (B11253_12990) tsaD 1293381..1294388 (-) 1008 WP_002921110.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8610_RS06590 (B11253_13000) - 1294385..1295779 (-) 1395 WP_002921108.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8610_RS06595 (B11253_13010) dxr 1295781..1296851 (-) 1071 WP_002921106.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8610_RS06600 (B11253_13020) cdsA 1296848..1297573 (-) 726 WP_002921103.1 phosphatidate cytidylyltransferase -
  R8610_RS06605 (B11253_13030) - 1297582..1297920 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18721.54 Da        Isoelectric Point: 6.4683

>NTDB_id=105202 R8610_RS06580 WP_002921112.1 1292865..1293380(-) (ctsG) [Campylobacter jejuni strain BCH-11253]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLNSIKTMSNVSGIENVDLSN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENVDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105202 R8610_RS06580 WP_002921112.1 1292865..1293380(-) (ctsG) [Campylobacter jejuni strain BCH-11253]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCTGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAACTCTATAAAAACAATGAGTAATGTAAGCGGGATTGAAAATGTCGATCTTAGCAAT
TTTAATGGTACAAAAGAAGTAAATTTTCGCGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCAGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATGTAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

97.076

100

0.971

Multiple sequence alignment