Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACEZDF_RS14010 Genome accession   NZ_CP169539
Coordinates   3060227..3060952 (+) Length   241 a.a.
NCBI ID   WP_033905914.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain BR53     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3055227..3065952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZDF_RS13995 (ACEZDF_13995) - 3056360..3058681 (+) 2322 WP_005379317.1 Tex family protein -
  ACEZDF_RS14000 (ACEZDF_14000) - 3058786..3059250 (-) 465 WP_005379316.1 hypothetical protein -
  ACEZDF_RS14005 (ACEZDF_14005) bioH 3059375..3060142 (-) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  ACEZDF_RS14010 (ACEZDF_14010) comF 3060227..3060952 (+) 726 WP_033905914.1 amidophosphoribosyltransferase Machinery gene
  ACEZDF_RS14015 (ACEZDF_14015) nfuA 3061050..3061634 (+) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  ACEZDF_RS14020 (ACEZDF_14020) nudE 3061811..3062380 (+) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  ACEZDF_RS14025 (ACEZDF_14025) cysQ 3062425..3063252 (+) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACEZDF_RS14030 (ACEZDF_14030) - 3063545..3064306 (-) 762 WP_017635007.1 type II secretion system protein N -
  ACEZDF_RS14035 (ACEZDF_14035) - 3064308..3064799 (-) 492 WP_054579409.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27823.08 Da        Isoelectric Point: 9.7698

>NTDB_id=1051955 ACEZDF_RS14010 WP_033905914.1 3060227..3060952(+) (comF) [Vibrio alginolyticus strain BR53]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVRLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1051955 ACEZDF_RS14010 WP_033905914.1 3060227..3060952(+) (comF) [Vibrio alginolyticus strain BR53]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAGGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACGGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

70.954

100

0.71
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477

Multiple sequence alignment