Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   R8610_RS02900 Genome accession   NZ_AP028384
Coordinates   558033..558683 (-) Length   216 a.a.
NCBI ID   WP_002921201.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11253     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 553033..563683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8610_RS02865 (B11253_05570) - 553411..554415 (+) 1005 WP_079264286.1 hypothetical protein -
  R8610_RS02870 (B11253_05580) tlyA 554412..555173 (+) 762 WP_002921216.1 TlyA family RNA methyltransferase -
  R8610_RS02875 (B11253_05590) ribF 555139..555993 (+) 855 WP_032588776.1 bifunctional riboflavin kinase/FAD synthetase -
  R8610_RS02880 (B11253_05600) cmoA 555980..556690 (+) 711 WP_079264284.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8610_RS02885 (B11253_05610) - 556680..556901 (-) 222 WP_072238629.1 EexN family lipoprotein -
  R8610_RS02890 (B11253_05620) - 556892..557332 (-) 441 WP_002868898.1 EexN family lipoprotein -
  R8610_RS02895 (B11253_05630) - 557390..558022 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  R8610_RS02900 (B11253_05640) CJE1441 558033..558683 (-) 651 WP_002921201.1 DNA/RNA non-specific endonuclease Regulator
  R8610_RS02905 (B11253_05650) nth 558680..559306 (-) 627 WP_002921198.1 endonuclease III -
  R8610_RS02910 (B11253_05660) peb4 559387..560208 (+) 822 WP_002892290.1 peptidylprolyl isomerase PEB4 -
  R8610_RS02915 (B11253_05670) fbaA 560208..561272 (+) 1065 WP_002880322.1 class II fructose-bisphosphate aldolase -
  R8610_RS02920 (B11253_05680) - 561367..562809 (+) 1443 WP_002866471.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25474.25 Da        Isoelectric Point: 9.8188

>NTDB_id=105191 R8610_RS02900 WP_002921201.1 558033..558683(-) (CJE1441) [Campylobacter jejuni strain BCH-11253]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNNENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=105191 R8610_RS02900 WP_002921201.1 558033..558683(-) (CJE1441) [Campylobacter jejuni strain BCH-11253]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAGGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATAATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639

Multiple sequence alignment