Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8618_RS06530 Genome accession   NZ_AP028383
Coordinates   1276853..1277368 (-) Length   171 a.a.
NCBI ID   WP_134250018.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11107     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1271853..1282368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8618_RS06515 (B11107_12750) - 1271959..1273776 (-) 1818 WP_317642678.1 motility associated factor glycosyltransferase family protein -
  R8618_RS06520 (B11107_12760) - 1273773..1275596 (-) 1824 WP_317642680.1 motility associated factor glycosyltransferase family protein -
  R8618_RS06525 (B11107_12770) - 1275606..1276853 (-) 1248 WP_249604177.1 DUF2920 family protein -
  R8618_RS06530 (B11107_12780) ctsG 1276853..1277368 (-) 516 WP_134250018.1 type II secretion system protein Machinery gene
  R8618_RS06535 (B11107_12790) tsaD 1277369..1278376 (-) 1008 WP_249604178.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8618_RS06540 (B11107_12800) - 1278373..1279767 (-) 1395 WP_249604179.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8618_RS06545 (B11107_12810) dxr 1279769..1280839 (-) 1071 WP_249604180.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8618_RS06550 (B11107_12820) cdsA 1280836..1281561 (-) 726 WP_002927449.1 phosphatidate cytidylyltransferase -
  R8618_RS06555 (B11107_12830) - 1281570..1281908 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18694.52 Da        Isoelectric Point: 6.4683

>NTDB_id=105175 R8618_RS06530 WP_134250018.1 1276853..1277368(-) (ctsG) [Campylobacter jejuni strain BCH-11107]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105175 R8618_RS06530 WP_134250018.1 1276853..1277368(-) (ctsG) [Campylobacter jejuni strain BCH-11107]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAGGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGTTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTTATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCAAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

95.322

100

0.953

Multiple sequence alignment