Detailed information NTG1051723

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACEYXE_RS08140
• Genome accession: NZ_CP169521
• Coordinates: 1600326..1601105 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain SZ-T8
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1595326..1606105

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEYXE_RS08120 (ACEYXE_08120)	trmFO	1596013..1597320 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACEYXE_RS08125 (ACEYXE_08125)	xerC	1597390..1598307 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACEYXE_RS08130 (ACEYXE_08130)	hslV	1598323..1598868 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACEYXE_RS08135 (ACEYXE_08135)	hslU	1598885..1600288 (+)	1404	WP_007409775.1	HslU--HslV peptidase ATPase subunit	-
ACEYXE_RS08140 (ACEYXE_08140)	codY	1600326..1601105 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACEYXE_RS08145 (ACEYXE_08145)	flgB	1601459..1601848 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACEYXE_RS08150 (ACEYXE_08150)	flgC	1601848..1602300 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ACEYXE_RS08155 (ACEYXE_08155)	fliE	1602311..1602631 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACEYXE_RS08160 (ACEYXE_08160)	fliF	1602674..1604284 (+)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
ACEYXE_RS08165 (ACEYXE_08165)	fliG	1604297..1605313 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACEYXE_RS08170 (ACEYXE_08170)	fliH	1605306..1606061 (+)	756	WP_023356896.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1051723 ACEYXE_RS08140 WP_003154263.1 1600326..1601105(+) (codY) [Bacillus velezensis strain SZ-T8]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1051723 ACEYXE_RS08140 WP_003154263.1 1600326..1601105(+) (codY) [Bacillus velezensis strain SZ-T8]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471