Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8634_RS06955 Genome accession   NZ_AP028381
Coordinates   1345347..1345862 (-) Length   171 a.a.
NCBI ID   WP_002860795.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11000     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1340347..1350862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8634_RS06940 (B11000_13720) - 1340457..1342274 (-) 1818 WP_317656023.1 motility associated factor glycosyltransferase family protein -
  R8634_RS06945 (B11000_13730) - 1342271..1344094 (-) 1824 WP_317656025.1 motility associated factor glycosyltransferase family protein -
  R8634_RS09375 (B11000_13740) - 1344104..1344766 (-) 663 WP_376798874.1 DUF2920 family protein -
  R8634_RS09380 (B11000_13750) - 1344763..1345347 (-) 585 WP_374220171.1 DUF2920 family protein -
  R8634_RS06955 (B11000_13760) ctsG 1345347..1345862 (-) 516 WP_002860795.1 type II secretion system protein Machinery gene
  R8634_RS06960 (B11000_13770) tsaD 1345863..1346870 (-) 1008 WP_002860794.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8634_RS06965 (B11000_13780) - 1346867..1348261 (-) 1395 WP_317656027.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8634_RS06970 (B11000_13790) dxr 1348263..1349333 (-) 1071 WP_002873627.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8634_RS06975 (B11000_13800) cdsA 1349330..1350055 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  R8634_RS06980 (B11000_13810) - 1350064..1350402 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18677.62 Da        Isoelectric Point: 7.8497

>NTDB_id=105123 R8634_RS06955 WP_002860795.1 1345347..1345862(-) (ctsG) [Campylobacter jejuni strain BCH-11000]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNKASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105123 R8634_RS06955 WP_002860795.1 1345347..1345862(-) (ctsG) [Campylobacter jejuni strain BCH-11000]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATAAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment