Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   O1Q80_RS04525 Genome accession   NZ_CP169368
Coordinates   943823..944119 (+) Length   98 a.a.
NCBI ID   WP_386695942.1    Uniprot ID   -
Organism   Lonepinella sp. MS14435     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 938823..949119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q80_RS04480 (O1Q80_00895) tolB 939278..940570 (+) 1293 WP_386695937.1 Tol-Pal system beta propeller repeat protein TolB -
  O1Q80_RS04485 (O1Q80_00896) pal 940593..941051 (+) 459 WP_386689769.1 peptidoglycan-associated lipoprotein Pal -
  O1Q80_RS04510 (O1Q80_00901) comN 941895..942419 (+) 525 WP_386695939.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  O1Q80_RS04515 (O1Q80_00902) - 942416..943147 (+) 732 WP_386690750.1 hypothetical protein -
  O1Q80_RS04520 (O1Q80_00903) - 943153..943839 (+) 687 WP_386695940.1 DUF2572 family protein -
  O1Q80_RS04525 (O1Q80_00904) comQ 943823..944119 (+) 297 WP_386695942.1 DUF5374 domain-containing protein Machinery gene
  O1Q80_RS04530 (O1Q80_00905) recC 944153..947548 (+) 3396 WP_386695944.1 exodeoxyribonuclease V subunit gamma -
  O1Q80_RS04535 (O1Q80_00906) - 947622..948842 (+) 1221 WP_386689788.1 ROK family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11168.09 Da        Isoelectric Point: 9.6302

>NTDB_id=1051023 O1Q80_RS04525 WP_386695942.1 943823..944119(+) (comQ) [Lonepinella sp. MS14435]
MILFPKFKQGMGLVTLLVALSLFSGIFLAINQWANIQRKTASEIYQRYQAIQIAENQQQRQFLGLNCESGVEQNQLKFSI
NCIGDKVKVRYILGEISL

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1051023 O1Q80_RS04525 WP_386695942.1 943823..944119(+) (comQ) [Lonepinella sp. MS14435]
ATGATTTTATTCCCTAAATTCAAGCAAGGAATGGGGCTTGTGACCTTATTAGTGGCGTTGAGCCTATTTAGTGGCATTTT
TCTTGCTATTAATCAGTGGGCGAATATTCAACGCAAAACAGCAAGTGAAATTTATCAACGTTATCAAGCGATTCAAATAG
CGGAAAATCAACAGCAACGACAATTTTTAGGATTAAATTGTGAAAGTGGAGTAGAGCAAAATCAACTGAAATTCTCCATT
AATTGCATTGGGGATAAGGTAAAAGTGCGGTATATTTTGGGGGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(59-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

52.083

97.959

0.51

Multiple sequence alignment