Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8580_RS06530 Genome accession   NZ_AP028380
Coordinates   1280570..1281085 (-) Length   171 a.a.
NCBI ID   WP_002872668.1    Uniprot ID   A0A5Y9KN14
Organism   Campylobacter jejuni strain BCH-10998     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1275570..1286085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8580_RS06515 (B10998_12750) - 1275671..1277488 (-) 1818 WP_111947112.1 motility associated factor glycosyltransferase family protein -
  R8580_RS06520 (B10998_12760) - 1277485..1279317 (-) 1833 WP_111947111.1 motility associated factor glycosyltransferase family protein -
  R8580_RS06525 (B10998_12770) - 1279329..1280570 (-) 1242 WP_052785485.1 DUF2920 family protein -
  R8580_RS06530 (B10998_12780) ctsG 1280570..1281085 (-) 516 WP_002872668.1 type II secretion system protein Machinery gene
  R8580_RS06535 (B10998_12790) tsaD 1281086..1282093 (-) 1008 WP_052785486.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8580_RS06540 (B10998_12800) - 1282090..1283484 (-) 1395 WP_052777897.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8580_RS06545 (B10998_12810) dxr 1283486..1284556 (-) 1071 WP_063674744.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8580_RS06550 (B10998_12820) cdsA 1284553..1285278 (-) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  R8580_RS06555 (B10998_12830) - 1285287..1285625 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18675.56 Da        Isoelectric Point: 7.1357

>NTDB_id=105096 R8580_RS06530 WP_002872668.1 1280570..1281085(-) (ctsG) [Campylobacter jejuni strain BCH-10998]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLRSIKTMSNVSGIENVDLGN
FNGAKEVNFRVGDDKECLKLVFVNKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105096 R8580_RS06530 WP_002872668.1 1280570..1281085(-) (ctsG) [Campylobacter jejuni strain BCH-10998]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCGGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGATCTATAAAAACGATGAGTAATGTAAGCGGGATTGAAAATGTCGATCTTGGCAAT
TTTAATGGCGCAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTGTAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATTTTAAGCAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y9KN14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment