Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R9A00_RS06645 Genome accession   NZ_AP028376
Coordinates   1285128..1285643 (-) Length   171 a.a.
NCBI ID   WP_002875272.1    Uniprot ID   A0A5T0KSE7
Organism   Campylobacter jejuni strain BCH-10927     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280128..1290643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A00_RS06630 (B10927_13060) - 1280243..1282057 (-) 1815 WP_317729338.1 motility associated factor glycosyltransferase family protein -
  R9A00_RS06635 (B10927_13070) - 1282054..1283877 (-) 1824 WP_317729339.1 motility associated factor glycosyltransferase family protein -
  R9A00_RS06640 (B10927_13080) - 1283887..1285128 (-) 1242 WP_002902404.1 DUF2920 family protein -
  R9A00_RS06645 (B10927_13090) ctsG 1285128..1285643 (-) 516 WP_002875272.1 type II secretion system protein Machinery gene
  R9A00_RS06650 (B10927_13100) tsaD 1285644..1286651 (-) 1008 WP_002875271.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R9A00_RS06655 (B10927_13110) - 1286648..1288042 (-) 1395 WP_100623847.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R9A00_RS06660 (B10927_13120) dxr 1288044..1289114 (-) 1071 WP_182263834.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R9A00_RS06665 (B10927_13130) cdsA 1289111..1289836 (-) 726 WP_002888102.1 phosphatidate cytidylyltransferase -
  R9A00_RS06670 (B10927_13140) - 1289845..1290183 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18650.51 Da        Isoelectric Point: 6.4682

>NTDB_id=105053 R9A00_RS06645 WP_002875272.1 1285128..1285643(-) (ctsG) [Campylobacter jejuni strain BCH-10927]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105053 R9A00_RS06645 WP_002875272.1 1285128..1285643(-) (ctsG) [Campylobacter jejuni strain BCH-10927]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0KSE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment