Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8946_RS06745 Genome accession   NZ_AP028374
Coordinates   1302502..1303005 (-) Length   167 a.a.
NCBI ID   WP_052798162.1    Uniprot ID   A0A5Y4VLA8
Organism   Campylobacter jejuni strain BCH-10881     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1297502..1308005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8946_RS06730 (B10881_13260) - 1297597..1299323 (-) 1727 Protein_1306 flagellin A -
  R8946_RS06735 (B10881_13270) - 1299406..1301232 (-) 1827 WP_317726861.1 motility associated factor glycosyltransferase family protein -
  R8946_RS06740 - 1301242..1302491 (-) 1250 Protein_1308 DUF2920 family protein -
  R8946_RS06745 (B10881_13300) ctsG 1302502..1303005 (-) 504 WP_052798162.1 type II secretion system protein Machinery gene
  R8946_RS06750 (B10881_13310) tsaD 1303006..1304013 (-) 1008 WP_002875973.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8946_RS06755 (B10881_13320) - 1304010..1305404 (-) 1395 WP_139884690.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8946_RS06760 (B10881_13330) dxr 1305406..1306476 (-) 1071 WP_041160209.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8946_RS06765 (B10881_13340) cdsA 1306473..1307198 (-) 726 WP_100626174.1 phosphatidate cytidylyltransferase -
  R8946_RS06770 (B10881_13350) - 1307208..1307546 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18384.24 Da        Isoelectric Point: 7.2439

>NTDB_id=105027 R8946_RS06745 WP_052798162.1 1302502..1303005(-) (ctsG) [Campylobacter jejuni strain BCH-10881]
MKKAFTILELVFVIVILGILAAIALPKMSSSKHEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVSDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKIYLL

Nucleotide


Download         Length: 504 bp        

>NTDB_id=105027 R8946_RS06745 WP_052798162.1 1302502..1303005(-) (ctsG) [Campylobacter jejuni strain BCH-10881]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTGGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGCATGAAGCCGAGGTTAGTAAGTCTTTAAACAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGAGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAAGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCCATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAATTTATCTTTTATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y4VLA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.216

100

0.922

Multiple sequence alignment