Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AKG93_RS01475 Genome accession   NZ_CP169261
Coordinates   311641..312366 (-) Length   241 a.a.
NCBI ID   WP_009700712.1    Uniprot ID   A0A454CZW2
Organism   Vibrio harveyi strain VH2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306641..317366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKG93_RS01450 (AKG93_001450) - 307798..308289 (+) 492 WP_005448492.1 type II secretion system protein M -
  AKG93_RS01455 (AKG93_001455) - 308291..309052 (+) 762 WP_005448490.1 type II secretion system protein N -
  AKG93_RS01460 (AKG93_001460) cysQ 309342..310169 (-) 828 WP_005448488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AKG93_RS01465 (AKG93_001465) nudE 310217..310783 (-) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  AKG93_RS01470 (AKG93_001470) nfuA 310959..311543 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  AKG93_RS01475 (AKG93_001475) comF 311641..312366 (-) 726 WP_009700712.1 ComF family protein Machinery gene
  AKG93_RS01480 (AKG93_001480) bioH 312451..313215 (+) 765 WP_053053809.1 pimeloyl-ACP methyl ester esterase BioH -
  AKG93_RS01485 (AKG93_001485) - 313352..313816 (+) 465 WP_009700714.1 hypothetical protein -
  AKG93_RS01490 (AKG93_001490) - 313920..316241 (-) 2322 WP_053053807.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27713.80 Da        Isoelectric Point: 8.4332

>NTDB_id=1050020 AKG93_RS01475 WP_009700712.1 311641..312366(-) (comF) [Vibrio harveyi strain VH2]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KIFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIMDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1050020 AKG93_RS01475 WP_009700712.1 311641..312366(-) (comF) [Vibrio harveyi strain VH2]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACACCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCTTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGATATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCATGTCGCGATTATGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTATTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.286

100

0.913
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465

Multiple sequence alignment