Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACEPPU_RS24550 Genome accession   NZ_CP169254
Coordinates   4627286..4629643 (-) Length   785 a.a.
NCBI ID   WP_013059293.1    Uniprot ID   A0A1Q8V101
Organism   Priestia aryabhattai strain YB01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4622286..4634643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPPU_RS24530 (ACEPPU_24530) alaS 4622595..4625228 (-) 2634 WP_252287745.1 alanine--tRNA ligase -
  ACEPPU_RS24535 (ACEPPU_24535) - 4625617..4626678 (-) 1062 WP_013059290.1 AI-2E family transporter -
  ACEPPU_RS24540 (ACEPPU_24540) - 4626793..4626927 (-) 135 WP_013059291.1 YrzQ family protein -
  ACEPPU_RS24545 (ACEPPU_24545) - 4626953..4627144 (-) 192 WP_013059292.1 hypothetical protein -
  ACEPPU_RS24550 (ACEPPU_24550) recD2 4627286..4629643 (-) 2358 WP_013059293.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACEPPU_RS24555 (ACEPPU_24555) - 4629668..4630327 (-) 660 WP_013059294.1 lipopolysaccharide assembly protein LapB -
  ACEPPU_RS24560 (ACEPPU_24560) mnmA 4630485..4631597 (-) 1113 WP_013059295.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACEPPU_RS24565 (ACEPPU_24565) - 4631704..4632846 (-) 1143 WP_055992479.1 cysteine desulfurase family protein -
  ACEPPU_RS24570 (ACEPPU_24570) cymR 4632870..4633286 (-) 417 WP_013059297.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88832.25 Da        Isoelectric Point: 5.0673

>NTDB_id=1049998 ACEPPU_RS24550 WP_013059293.1 4627286..4629643(-) (recD2) [Priestia aryabhattai strain YB01]
MNEEQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=1049998 ACEPPU_RS24550 WP_013059293.1 4627286..4629643(-) (recD2) [Priestia aryabhattai strain YB01]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCGATTGTAACGGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTTA
CAGGCTATTTTCCTAAGCTGAATGAAGATGAAGTATACACGTTTTACGGAGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTGTCTAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAACATTGTGGACGCCCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGCTTTAGCAGAGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCAGGTATTTTATATGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCAGAATCAGAATTCTTATTGGCACTGGGTGAACTAGAAGAGCGATTAGACGTGCAATATGCACCTTC
TCAGCGCAAGGGCATACAAACCGCTTTAATGTCTCCGATGCTTCTCTTAACAGGTGGACCAGGTACAGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGATTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCACCTACTGGACGCGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCAGTTACAAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAGAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGTCTGACAGATGTATACCGGCAAGCGGAAGGATCTTCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCCAGGCAGCAAGGAGATCGTTCCTTTATTCGTTGTCAAGGACAGCACATCACGAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTCTAGCTCCTATGTATAAAGGTCCTGC
AGGTATTGATAAGCTGAATGAAGTTCTTCAGGAATTATTCAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCGGTTTTTTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTTAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACCGCCGTTACGCGAAGC
AAACAGTTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGAAATGAAGACAGCGTCCGACAAAC
GAATTTACAGCCCTTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q8V101

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.939

99.618

0.637

Multiple sequence alignment