Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CH51_RS06740 Genome accession   NZ_CP007499
Coordinates   1333637..1334410 (+) Length   257 a.a.
NCBI ID   WP_000055335.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2395 USA500     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1328637..1339410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH51_RS06720 (CH51_06440) trmFO 1328981..1330288 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  CH51_RS06725 (CH51_06445) xerC 1330705..1331601 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  CH51_RS06730 (CH51_06450) hslV 1331598..1332143 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  CH51_RS06735 (CH51_06455) hslU 1332209..1333612 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  CH51_RS06740 (CH51_06460) codY 1333637..1334410 (+) 774 WP_000055335.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CH51_RS06745 - 1334461..1334553 (+) 93 WP_001790530.1 hypothetical protein -
  CH51_RS06750 (CH51_06465) rpsB 1334752..1335519 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  CH51_RS06755 - 1335553..1335666 (+) 114 WP_001789890.1 hypothetical protein -
  CH51_RS06760 (CH51_06470) tsf 1335701..1336582 (+) 882 WP_000201387.1 translation elongation factor Ts -
  CH51_RS06765 (CH51_06475) pyrH 1336719..1337441 (+) 723 WP_000057330.1 UMP kinase -
  CH51_RS06770 (CH51_06480) frr 1337460..1338014 (+) 555 WP_001280006.1 ribosome recycling factor -
  CH51_RS06775 (CH51_06485) - 1338387..1339157 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=104995 CH51_RS06740 WP_000055335.1 1333637..1334410(+) (codY) [Staphylococcus aureus strain 2395 USA500]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERIGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=104995 CH51_RS06740 WP_000055335.1 1333637..1334410(+) (codY) [Staphylococcus aureus strain 2395 USA500]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGAATAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424

Multiple sequence alignment