Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8947_RS02160 Genome accession   NZ_AP028371
Coordinates   440951..441478 (+) Length   175 a.a.
NCBI ID   WP_072213998.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10879     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435951..446478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8947_RS02135 (B10879_04210) - 436408..436743 (+) 336 WP_038833556.1 hypothetical protein -
  R8947_RS02140 (B10879_04220) - 436752..437480 (+) 729 WP_072214002.1 phosphatidate cytidylyltransferase -
  R8947_RS02145 (B10879_04230) dxr 437477..438553 (+) 1077 WP_072214001.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8947_RS02150 (B10879_04240) - 438550..439944 (+) 1395 WP_072214000.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8947_RS02155 (B10879_04250) tsaD 439941..440948 (+) 1008 WP_072213999.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8947_RS02160 (B10879_04260) ctsG 440951..441478 (+) 528 WP_072213998.1 type II secretion system protein Machinery gene
  R8947_RS02165 (B10879_04270) - 441465..442715 (+) 1251 WP_072213997.1 DUF2920 family protein -
  R8947_RS02170 (B10879_04280) - 442725..444545 (+) 1821 WP_317726731.1 motility associated factor glycosyltransferase family protein -
  R8947_RS02175 (B10879_04290) - 444542..446356 (+) 1815 WP_317726733.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19282.32 Da        Isoelectric Point: 8.4775

>NTDB_id=104994 R8947_RS02160 WP_072213998.1 440951..441478(+) (ctsG) [Campylobacter coli strain BCH-10879]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLGAMNLMSNVSGVENVDLKN
FTGIKEVKFRVGEDKECIKLIFIDKNDFVLMGIASNEASKNAIINIANNPKQEFQNLDFTSSSKNKACVALSKNENFKNL
ASQTYILIGGFDDSK

Nucleotide


Download         Length: 528 bp        

>NTDB_id=104994 R8947_RS02160 WP_072213998.1 440951..441478(+) (ctsG) [Campylobacter coli strain BCH-10879]
GTGAAAAGGGCTTTTACTATACTAGAACTTGTTTTTGTTATCGTGATCTTAGGAATTTTAGCAGCAATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAATAACCTTAAAACTTTAATTAATGATATAAGTATCT
ATGCCTTAAAAAATAGCCATTTGGGCGCTATGAATCTTATGAGCAATGTAAGCGGAGTGGAAAATGTCGATCTTAAAAAT
TTCACAGGCATAAAAGAAGTGAAATTTAGAGTGGGAGAAGATAAAGAGTGTATAAAGCTGATTTTCATCGATAAAAATGA
TTTTGTGTTGATGGGAATTGCTAGTAATGAAGCAAGTAAAAATGCCATAATCAATATAGCCAATAACCCAAAACAAGAAT
TTCAAAACTTAGACTTTACAAGTAGCTCAAAAAATAAGGCTTGCGTGGCATTAAGTAAAAATGAGAATTTTAAAAATTTA
GCGAGCCAAACTTATATTTTAATAGGGGGATTTGATGATAGTAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

76.023

97.714

0.743

Multiple sequence alignment