Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACEUKD_RS00690 Genome accession   NZ_CP169050
Coordinates   149296..150021 (-) Length   241 a.a.
NCBI ID   WP_258430431.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SF42     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144296..155021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS00665 (ACEUKD_00665) - 145440..145931 (+) 492 WP_085343383.1 type II secretion system protein M -
  ACEUKD_RS00670 (ACEUKD_00670) - 145933..146694 (+) 762 WP_006741793.1 type II secretion system protein N -
  ACEUKD_RS00675 (ACEUKD_00675) cysQ 146996..147823 (-) 828 WP_005394972.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACEUKD_RS00680 (ACEUKD_00680) nudE 147868..148437 (-) 570 WP_005394971.1 ADP compounds hydrolase NudE -
  ACEUKD_RS00685 (ACEUKD_00685) nfuA 148614..149198 (-) 585 WP_006741794.1 Fe-S biogenesis protein NfuA -
  ACEUKD_RS00690 (ACEUKD_00690) comF 149296..150021 (-) 726 WP_258430431.1 ComF family protein Machinery gene
  ACEUKD_RS00695 (ACEUKD_00695) bioH 150106..150873 (+) 768 WP_085343415.1 pimeloyl-ACP methyl ester esterase BioH -
  ACEUKD_RS00700 (ACEUKD_00700) - 150998..151462 (+) 465 WP_374093148.1 ATP-dependent Lon protease -
  ACEUKD_RS00705 (ACEUKD_00705) - 151551..153872 (-) 2322 WP_374093147.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27760.93 Da        Isoelectric Point: 9.2447

>NTDB_id=1049530 ACEUKD_RS00690 WP_258430431.1 149296..150021(-) (comF) [Vibrio diabolicus strain SF42]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPNHTHALRWCEHCLQHLTPIKRCQRCGLTLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTQQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAQQLQTNFDA
KVFRRVRLAQSQRGNTKASREQNLKGAFVLNKRPPSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1049530 ACEUKD_RS00690 WP_258430431.1 149296..150021(-) (comF) [Vibrio diabolicus strain SF42]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTGTTGAGCAGTCAATGCGGTCTGTGTCGGTTCCCGATTCAAAC
ACCAAACCACACGCATGCTCTGCGTTGGTGTGAGCACTGCTTACAACACCTAACTCCAATCAAGCGATGCCAACGTTGCG
GTTTAACGTTACAGAAAGAAGAGATGAGTACGGATAGTATTTGTGGTGAATGCCTTTCAGAACCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCATGGAGAGTCTTGGCATGT
AAAAGCACTAACCCAGCAACTGGCGCAGCGCATTACAACACCAGCCCCAATCATTACCAGTGTGCCACTGCACTGGCAGC
GCTACCTACGCCGGGGGTTTAATCAAAGTGATGTTTTAGCCCGACATTTAGCCCAGCAATTGCAGACCAATTTTGATGCG
AAGGTCTTTCGCCGGGTCAGACTCGCCCAATCACAGCGTGGTAATACCAAAGCAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTGTTCTCAATAAGCGACCGCCATCTTCCCACGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

73.361

100

0.743
  comF Vibrio cholerae strain A1552

48.333

99.585

0.481

Multiple sequence alignment